PDB entry 2pbz

View 2pbz on RCSB PDB site
Description: Crystal structure of an IMP biosynthesis protein PurP from Thermococcus kodakaraensis
Class: ligase
Keywords: NYSGXRC, PSI-II, Crystal structure, IMP biosynthesis, ATP binding protein, PurP, 10188d, Structural Genomics, Protein Structure Initiative, New York Structural GenomiX Research Consortium
Deposited on 2007-03-29, released 2007-04-10
The last revision prior to the SCOP 1.75 freeze date was dated 2007-04-10, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.276
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical protein
    Species: Thermococcus kodakaraensis
    Gene: PurP, TK0431
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JD28 (3-311)
      • modified residue (53)
      • modified residue (237)
      • modified residue (289)
    Domains in SCOP 1.75: d2pbza1, d2pbza2
  • Chain 'B':
    Compound: hypothetical protein
    Species: Thermococcus kodakaraensis
    Gene: PurP, TK0431
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JD28 (3-311)
      • modified residue (53)
      • modified residue (237)
      • modified residue (289)
    Domains in SCOP 1.75: d2pbzb1, d2pbzb2
  • Chain 'C':
    Compound: hypothetical protein
    Species: Thermococcus kodakaraensis
    Gene: PurP, TK0431
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JD28 (3-311)
      • modified residue (53)
      • modified residue (237)
      • modified residue (289)
    Domains in SCOP 1.75: d2pbzc1, d2pbzc2
  • Heterogens: ATP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2pbzA (A:)
mslivstiashsslqillgakkegfktrlyvspkrrpfysslpivddlvvaeemtsilnd
dgivvphgsfvaylgieaiekakarffgnrrflkwettfelqdkalegagiprvevvepe
dakpdelyfvriegprggsghfivegseleerlstleepyrverfipgvylyvhffyspi
lerlellgvdervliadgnarwpvkplpytivgnraialresllpqlydyglafvrtmre
leppgvigpfalhfaydgsfkaigiasridggsnadhwyselywgerlsmgrriarelrl
aeeedrleevvteghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2pbzA (A:)
ivstiashsslqillgakkegfktrlyvspkrrpfysslpivddlvvaeemtsilnddgi
vvphgsfvaylgieaiekakarffgnrrflkwettfelqdkalegagiprvevvepedak
pdelyfvriegseleerlspyrverfipgvylyvhffyspilerlellgvdervliadgn
arwpvkplpytivgnraialresllpqlydyglafvrtmreleppgvigpfalhfaydgs
fkaigiasridggsnadhwyselywgerlsmgrriarelrlaeeedrleevvt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2pbzB (B:)
mslivstiashsslqillgakkegfktrlyvspkrrpfysslpivddlvvaeemtsilnd
dgivvphgsfvaylgieaiekakarffgnrrflkwettfelqdkalegagiprvevvepe
dakpdelyfvriegprggsghfivegseleerlstleepyrverfipgvylyvhffyspi
lerlellgvdervliadgnarwpvkplpytivgnraialresllpqlydyglafvrtmre
leppgvigpfalhfaydgsfkaigiasridggsnadhwyselywgerlsmgrriarelrl
aeeedrleevvteghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2pbzB (B:)
ivstiashsslqillgakkegfktrlyvspkrrpfysslpivddlvvaeemtsilnddgi
vvphgsfvaylgieaiekakarffgnrrflkwettfelqdkalegagiprvevvepedak
pdelyfvriegseleerlspyrverfipgvylyvhffyspilerlellgvdervliadgn
arwpvkplpytivgnraialresllpqlydyglafvrtmreleppgvigpfalhfaydgs
fkaigiasridggsnadhwyselywgerlsmgrriarelrlaeeedrleevvt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2pbzC (C:)
mslivstiashsslqillgakkegfktrlyvspkrrpfysslpivddlvvaeemtsilnd
dgivvphgsfvaylgieaiekakarffgnrrflkwettfelqdkalegagiprvevvepe
dakpdelyfvriegprggsghfivegseleerlstleepyrverfipgvylyvhffyspi
lerlellgvdervliadgnarwpvkplpytivgnraialresllpqlydyglafvrtmre
leppgvigpfalhfaydgsfkaigiasridggsnadhwyselywgerlsmgrriarelrl
aeeedrleevvteghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2pbzC (C:)
ivstiashsslqillgakkegfktrlyvspkrrpfysslpivddlvvaeemtsilnddgi
vvphgsfvaylgieaiekakarffgnrrflkwettfelqdkalegagiprvevvepedak
pdelyfvriegseleerlspyrverfipgvylyvhffyspilerlellgvdervliadgn
arwpvkplpytivgnraialresllpqlydyglafvrtmreleppgvigpfalhfaydgs
fkaigiasridggsnadhwyselywgerlsmgrriarelrlaeeedrleevvt