PDB entry 2pb9

View 2pb9 on RCSB PDB site
Description: Crystal structure of C-terminal domain of phosphomethylpyrimidine kinase
Class: transferase
Keywords: phosphate, psi2, 10417c, NYSGXRC, Structural Genomics, Protein Structure Initiative, New York Structural GenomiX Research Consortium
Deposited on 2007-03-28, released 2007-04-10
The last revision prior to the SCOP 1.75 freeze date was dated 2007-04-10, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.234
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: phosphomethylpyrimidine kinase
    Species: Pyrococcus furiosus
    Gene: PF1333
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8U193 (3-186)
      • modified residue (85)
      • modified residue (167)
      • modified residue (184)
    Domains in SCOP 1.75: d2pb9a1
  • Chain 'B':
    Compound: phosphomethylpyrimidine kinase
    Species: Pyrococcus furiosus
    Gene: PF1333
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8U193 (3-186)
      • modified residue (85)
      • modified residue (167)
      • modified residue (184)
    Domains in SCOP 1.75: d2pb9b1
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2pb9A (A:)
mslekwriyeeltnavrefesinpvrlipevgtnfvyslplpyarstkdvagvkgrivky
gnsvkavgpvefgasdhlaravltymrfypeyrsainirysreiieeiieiaqergfkvs
fydrreepeeikakegatipwgietaikrikerpdiiyhlgdvgkepmilvfgrnprevl
ekikmlieghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2pb9A (A:)
ekwriyeeltnavrefesinpvrlipevgtnfvyslplpyarstkdvagvkgrivkygns
vkavgpvefgasdhlaravltymrfypeyrsainirysreiieeiieiaqergfkvsfyd
rreepeeikakegatipwgietaikrikerpdiiyhlgdvgkepmilvfgrnprevleki
kmli

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2pb9B (B:)
mslekwriyeeltnavrefesinpvrlipevgtnfvyslplpyarstkdvagvkgrivky
gnsvkavgpvefgasdhlaravltymrfypeyrsainirysreiieeiieiaqergfkvs
fydrreepeeikakegatipwgietaikrikerpdiiyhlgdvgkepmilvfgrnprevl
ekikmlieghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2pb9B (B:)
ekwriyeeltnavrefesinpvrlipevgtnfvyslplpyarstkdvagvkgrivkygns
vkavgpvefgasdhlaravltymrfypeyrsainirysreiieeiieiaqergfkvsfyd
rreepeeikakegatipwgietaikrikerpdiiyhlgdvgkepmilvfgrnprevleki
kmli