PDB entry 2paq

View 2paq on RCSB PDB site
Description: Crystal structure of the 5'-deoxynucleotidase YfbR
Class: hydrolase
Keywords: Nucleotidase, 5'-deoxynucleotidase, YfbR, HD domain phosphohydrolase, Structural genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, HYDROLASE
Deposited on 2007-03-27, released 2007-04-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5'-deoxynucleotidase YfbR
    Species: Escherichia coli [TaxId:83333]
    Gene: yfbR, b2291, JW2288
    Database cross-references and differences (RAF-indexed):
    • Uniprot P76491
      • modified residue (23)
      • modified residue (40)
      • modified residue (67)
      • modified residue (108)
      • modified residue (176)
      • modified residue (180)
    Domains in SCOPe 2.08: d2paqa_
  • Chain 'B':
    Compound: 5'-deoxynucleotidase YfbR
    Species: Escherichia coli [TaxId:83333]
    Gene: yfbR, b2291, JW2288
    Database cross-references and differences (RAF-indexed):
    • Uniprot P76491
      • modified residue (23)
      • modified residue (40)
      • modified residue (67)
      • modified residue (108)
      • modified residue (176)
      • modified residue (180)
    Domains in SCOPe 2.08: d2paqb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2paqA (A:)
ghmkqshffahlsrlklinrwplmrnvrtenvsehslqvamvahalaaiknrkfggnvna
eriallamyhdasevltgdlptpvkyfnsqiaqeykaiekiaqqklvdmvpeelrdifap
lidehaysdeekslvkqadalcaylkcleelaagnnefllaktrleatlearrsqemdyf
meifvpsfhlsldeisqdspl

    Sequence, based on observed residues (ATOM records): (download) 
    >2paqA (A:)
kqshffahlsrlklinrwplmrnvrtenvsehslqvamvahalaaiknrkfggnvnaeri
allamyhdasevltgdlptpqeykaiekiaqqklvdmvpeelrdifaplidehaysdeek
slvkqadalcaylkcleelaagnnefllaktrleatlearrsqemdyfmeifvpsfh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2paqB (B:)
ghmkqshffahlsrlklinrwplmrnvrtenvsehslqvamvahalaaiknrkfggnvna
eriallamyhdasevltgdlptpvkyfnsqiaqeykaiekiaqqklvdmvpeelrdifap
lidehaysdeekslvkqadalcaylkcleelaagnnefllaktrleatlearrsqemdyf
meifvpsfhlsldeisqdspl

    Sequence, based on observed residues (ATOM records): (download) 
    >2paqB (B:)
kqshffahlsrlklinrwplmrnvrtenvsehslqvamvahalaaiknrkfggnvnaeri
allamyhdasevltgdlptpeykaiekiaqqklvdmvpeelrdifaplidehaysdeeks
lvkqadalcaylkcleelaagnnefllaktrleatlearrsqemdyfmeifvpsfh