PDB entry 2oyh

View 2oyh on RCSB PDB site
Description: Crystal Structure of Fragment D of gammaD298,301A Fibrinogen with the Peptide Ligand Gly-His-Arg-Pro-Amide
Class: blood clotting
Keywords: blood clotting, fibrinogen, fibrinogen fragment D, variant fibrinogen, gammaD298,301A fibrinogen
Deposited on 2007-02-22, released 2007-05-15
The last revision prior to the SCOP 1.75 freeze date was dated 2007-05-15, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.22
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fibrinogen alpha chain
    Species: HOMO SAPIENS
    Gene: FGA
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2oyha1
  • Chain 'B':
    Compound: fibrinogen beta chain
    Species: HOMO SAPIENS
    Gene: FGB
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Fibrinogen gamma chain
    Species: HOMO SAPIENS
    Gene: FGG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02679 (0-End)
      • engineered (202)
      • engineered (205)
    Domains in SCOP 1.75: d2oyhc1, d2oyhc2
  • Chain 'D':
    Compound: fibrinogen alpha chain
    Species: HOMO SAPIENS
    Gene: FGA
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2oyhd1
  • Chain 'E':
    Compound: fibrinogen beta chain
    Species: HOMO SAPIENS
    Gene: FGB
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Fibrinogen gamma chain
    Species: HOMO SAPIENS
    Gene: FGG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02679
      • engineered (202)
      • engineered (205)
  • Chain 'G':
    Compound: GHRP peptide
    Species: synthetic, synthetic
  • Chain 'H':
    Compound: GHRP peptide
    Species: synthetic, synthetic
  • Chain 'I':
    Compound: GHRP peptide
    Species: synthetic, synthetic
  • Chain 'J':
    Compound: GHRP peptide
    Species: synthetic, synthetic
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2oyhA (A:)
viekvqhiqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkql
eqviak

    Sequence, based on observed residues (ATOM records): (download) 
    >2oyhA (A:)
iekvqhiqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkqle
qvia

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2oyhC (C:)
yeasilthdssirylqeiynsnnqkivnlkekvaqleaqcqepckdtvqihditgkdcqd
iankgakqsglyfikplkanqqflvyceidgsgngwtvfqkrldgsvdfkknwiqykegf
ghlsptgttefwlgnekihlistqsaipyalrveledwngrtstadyamfkvgpeadkyr
ltyayfaggdagdafdgfdfgdapsakfftshngmqfstwdndndkfegncaeqdgsgww
mnkchaghlngvyyqggtyskastpngydngiiwatwktrwysmkkttmkiipfnrltig
egqqhhlggak

    Sequence, based on observed residues (ATOM records): (download) 
    >2oyhC (C:)
yeasilthdssirylqeiynsnnqkivnlkekvaqleaqcqepckdtvqihditgkdcqd
iankgakqsglyfikplkanqqflvyceidgsgngwtvfqkrldgsvdfkknwiqykegf
ghlsptgttefwlgnekihlistqsaipyalrveledwngrtstadyamfkvgpeadkyr
ltyayfaggdagdafdgfdfgdapsakfftshngmqfstwdndndkfegncaeqdgsgww
mnkchaghlngvyyqggtyskastpngydngiiwatwktrwysmkkttmkiipfnrlti

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2oyhD (D:)
viekvqhiqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkql
eqviak

    Sequence, based on observed residues (ATOM records): (download) 
    >2oyhD (D:)
iqllqknvraqlvdmkrlevdidikirscrgscsralarevdlkdyedqqkqle

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.