PDB entry 2oxq

View 2oxq on RCSB PDB site
Description: Structure of the UbcH5 :CHIP U-box complex
Class: Ligase
Keywords: protein-protein complex, Ligase
Deposited on 2007-02-20, released 2008-02-19
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.24
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin-conjugating enzyme E2D 1
    Species: Danio rerio [TaxId:7955]
    Gene: ube2d1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6PC58 (5-151)
      • expression tag (3-4)
    Domains in SCOPe 2.06: d2oxqa1, d2oxqa2
  • Chain 'B':
    Compound: Ubiquitin-conjugating enzyme E2D 1
    Species: Danio rerio [TaxId:7955]
    Gene: ube2d1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6PC58 (5-151)
      • expression tag (3-4)
    Domains in SCOPe 2.06: d2oxqb1, d2oxqb2
  • Chain 'C':
    Compound: STIP1 homology and U-Box containing protein 1
    Species: Danio rerio [TaxId:7955]
    Gene: stub1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2oxqc_
  • Chain 'D':
    Compound: STIP1 homology and U-Box containing protein 1
    Species: Danio rerio [TaxId:7955]
    Gene: stub1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2oxqd_
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2oxqA (A:)
gamgsmalkriqkelqdlqrdppaqcsagpvgddlfhwqatimgpsdspyqggvffltih
fptdypfkppkvafttkiyhpninsngsicldilrsqwspaltvskvllsicsllcdpnp
ddplvpdiahiyksdkekynrlarewtqkyam

    Sequence, based on observed residues (ATOM records): (download) 
    >2oxqA (A:)
gsmalkriqkelqdlqrdppaqcsagpvgddlfhwqatimgpsdspyqggvffltihfpt
dypfkppkvafttkiyhpninsngsicldilrsqwspaltvskvllsicsllcdpnpddp
lvpdiahiyksdkekynrlarewtqkyam

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2oxqB (B:)
gamgsmalkriqkelqdlqrdppaqcsagpvgddlfhwqatimgpsdspyqggvffltih
fptdypfkppkvafttkiyhpninsngsicldilrsqwspaltvskvllsicsllcdpnp
ddplvpdiahiyksdkekynrlarewtqkyam

    Sequence, based on observed residues (ATOM records): (download) 
    >2oxqB (B:)
gsmalkriqkelqdlqrdppaqcsagpvgddlfhwqatimgpsdspyqggvffltihfpt
dypfkppkvafttkiyhpninsngsicldilrsqwspaltvskvllsicsllcdpnpddp
lvpdiahiyksdkekynrlarewtqkyam

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2oxqC (C:)
gamgskkreipdylcgkisfelmaepcitpsgitydrkdieehlqrvghfdpvtrspltq
dqlipnlamkevidafiqen

    Sequence, based on observed residues (ATOM records): (download) 
    >2oxqC (C:)
eipdylcgkisfelmaepcitpsgitydrkdieehlqrvghfdpvtrspltqdqlipnla
mkevidafiqen

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2oxqD (D:)
gamgskkreipdylcgkisfelmaepcitpsgitydrkdieehlqrvghfdpvtrspltq
dqlipnlamkevidafiqen

    Sequence, based on observed residues (ATOM records): (download) 
    >2oxqD (D:)
eipdylcgkisfelmaepcitpsgitydrkdieehlqrvghfdpvtrspltqdqlipnla
mkevidafiqen