PDB entry 2otm

View 2otm on RCSB PDB site
Description: Crystal structure of a putative endoribonuclease (so_1960) from shewanella oneidensis mr-1 at 1.85 A resolution
Class: unknown function
Keywords: Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function
Deposited on 2007-02-08, released 2007-02-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical protein
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: NP_717567.1, SO_1960
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EFL1 (Start-153)
      • modified residue (2)
      • modified residue (37)
      • modified residue (132)
      • modified residue (139)
    Domains in SCOPe 2.08: d2otma1
  • Chain 'B':
    Compound: hypothetical protein
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: NP_717567.1, SO_1960
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EFL1 (1-153)
      • modified residue (1-2)
      • modified residue (37)
      • modified residue (132)
      • modified residue (139)
    Domains in SCOPe 2.08: d2otmb_
  • Chain 'C':
    Compound: hypothetical protein
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: NP_717567.1, SO_1960
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EFL1 (Start-153)
      • modified residue (37)
      • modified residue (132)
      • modified residue (139)
    Domains in SCOPe 2.08: d2otmc_
  • Heterogens: CA, NA, ACT, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2otmA (A:)
gmmntpesrlvaaglelpevaaalgnyepysivgsqlmtsgqfpylqgkllyqgqlgady
tvsegyaacrlatlnaiaqlkqacgelsrikqiyrlegvlnvhqsciehpkaldgasdll
leifgeagrhsrmiwtnpvmplnslclvylfael

    Sequence, based on observed residues (ATOM records): (download) 
    >2otmA (A:)
mntpesrlvaaglelpevaaalgnyepysivgsqlmtsgqfpylqgkllyqgqlgadytv
segyaacrlatlnaiaqlkqacgelsrikqiyrlegvlnvhqsciehpkaldgasdllle
ifgeagrhsrmiwtnpvmplnslclvylfael

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2otmB (B:)
gmmntpesrlvaaglelpevaaalgnyepysivgsqlmtsgqfpylqgkllyqgqlgady
tvsegyaacrlatlnaiaqlkqacgelsrikqiyrlegvlnvhqsciehpkaldgasdll
leifgeagrhsrmiwtnpvmplnslclvylfael

    Sequence, based on observed residues (ATOM records): (download) 
    >2otmB (B:)
mmntpesrlvaaglelpevaaalgnyepysivgsqlmtsgqfpylqgkllyqgqlgadyt
vsegyaacrlatlnaiaqlkqacgelsrikqiyrlegvlnvhqsciehpkaldgasdlll
eifgeagrhsrmiwtnpvmplnslclvylfael

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2otmC (C:)
gmmntpesrlvaaglelpevaaalgnyepysivgsqlmtsgqfpylqgkllyqgqlgady
tvsegyaacrlatlnaiaqlkqacgelsrikqiyrlegvlnvhqsciehpkaldgasdll
leifgeagrhsrmiwtnpvmplnslclvylfael

    Sequence, based on observed residues (ATOM records): (download) 
    >2otmC (C:)
ntpesrlvaaglelpevaaalgnyepysivgsqlmtsgqfpylqgkllyqgqlgadytvs
egyaacrlatlnaiaqlkqacgelsrikqiyrlegvlnvhqsciehpkaldgasdlllei
fgeagrhsrmiwtnpvmplnslclvylfael