PDB entry 2orj

View 2orj on RCSB PDB site
Description: crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with N-acetyl mannosamine
Class: Sugar Binding Protein
Keywords: Surfactant protein Carbohydrate recognition domain trimeric
Deposited on 2007-02-02, released 2007-05-08
The last revision prior to the SCOP 1.75 freeze date was dated 2007-05-08, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.181
AEROSPACI score: 0.63 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pulmonary surfactant-associated protein D
    Species: HOMO SAPIENS
    Gene: SFTPD, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2orja1, d2orja2
  • Chain 'B':
    Compound: Pulmonary surfactant-associated protein D
    Species: HOMO SAPIENS
    Gene: SFTPD, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2orjb1, d2orjb2
  • Chain 'C':
    Compound: Pulmonary surfactant-associated protein D
    Species: HOMO SAPIENS
    Gene: SFTPD, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2orjc1, d2orjc2
  • Heterogens: CA, BM3, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2orjA (A:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >2orjA (A:)
aslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqa
ggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepnd
dggsedcveiftngkwndracgekrlvvcef

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2orjB (B:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >2orjB (B:)
aslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqa
ggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepnd
dggsedcveiftngkwndracgekrlvvcef

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2orjC (C:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >2orjC (C:)
aslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqa
ggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepnd
dggsedcveiftngkwndracgekrlvvcef