PDB entry 2orj
View 2orj on RCSB PDB site
Description: crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with N-acetyl mannosamine
Class: Sugar Binding Protein
Keywords: Surfactant protein
Carbohydrate recognition domain
trimeric
Deposited on
2007-02-02, released
2007-05-08
The last revision prior to the SCOP 1.73 freeze date was dated
2007-05-08, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.181
AEROSPACI score: 0.53
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Pulmonary surfactant-associated protein D
Species: HOMO SAPIENS
Gene: SFTPD, PSPD, SFTP4
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2orja1, d2orja2 - Chain 'B':
Compound: Pulmonary surfactant-associated protein D
Species: HOMO SAPIENS
Gene: SFTPD, PSPD, SFTP4
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2orjb1, d2orjb2 - Chain 'C':
Compound: Pulmonary surfactant-associated protein D
Species: HOMO SAPIENS
Gene: SFTPD, PSPD, SFTP4
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2orjc1, d2orjc2 - Heterogens: CA, BM3, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2orjA (A:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef
Sequence, based on observed residues (ATOM records): (download)
>2orjA (A:)
aslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqa
ggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepnd
dggsedcveiftngkwndracgekrlvvcef
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2orjB (B:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef
Sequence, based on observed residues (ATOM records): (download)
>2orjB (B:)
aslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqa
ggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepnd
dggsedcveiftngkwndracgekrlvvcef
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2orjC (C:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef
Sequence, based on observed residues (ATOM records): (download)
>2orjC (C:)
aslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctqa
ggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepnd
dggsedcveiftngkwndracgekrlvvcef