PDB entry 2or9
View 2or9 on RCSB PDB site
Description: The structure of the anti-c-myc antibody 9E10 Fab fragment/epitope peptide complex reveals a novel binding mode dominated by the heavy chain hypervariable loops
Class: immune system
Keywords: ANTIGEN-ANTIBODY COMPLEX, ANTIGEN RECOGNITION, myc-tag, long CDR H3, IMMUNE SYSTEM
Deposited on
2007-02-02, released
2008-02-12
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-01-20, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.252
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: Monoclonal anti-c-myc antibody 9E10
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d2or9h1 - Chain 'I':
Compound: Monoclonal anti-c-myc antibody 9E10
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d2or9i1 - Chain 'L':
Compound: Monoclonal anti-c-myc antibody 9E10
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'M':
Compound: Monoclonal anti-c-myc antibody 9E10
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: synthetic epitope peptide of 9E10
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>2or9H (H:)
evhlvesggdlvkpggslklscaasgftfshygmswvrqtpdkrlewvatigsrgtythy
pdsvkgrftisrdndknalylqmnslksedtamyycarrsefyyygntyyysamdywgqg
asvtvssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtf
pavlqsdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprd
Sequence, based on observed residues (ATOM records): (download)
>2or9H (H:)
evhlvesggdlvkpggslklscaasgftfshygmswvrqtpdkrlewvatigsrgtythy
pdsvkgrftisrdndknalylqmnslksedtamyycarrsefyyygntyyysamdywgqg
asvtvssakttppsvyplapgssmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlq
sdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivp
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>2or9I (I:)
evhlvesggdlvkpggslklscaasgftfshygmswvrqtpdkrlewvatigsrgtythy
pdsvkgrftisrdndknalylqmnslksedtamyycarrsefyyygntyyysamdywgqg
asvtvssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtf
pavlqsdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprd
- Chain 'L':
No sequence available.
- Chain 'M':
No sequence available.
- Chain 'P':
No sequence available.