PDB entry 2oqm

View 2oqm on RCSB PDB site
Description: Crystal structure of a dinb family member protein (sden_0562) from shewanella denitrificans at 1.83 A resolution
Class: unknown function
Keywords: Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function
Deposited on 2007-01-31, released 2007-02-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 1.83 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical protein
    Species: Shewanella denitrificans [TaxId:192073]
    Gene: YP_561575.1, Sden_0562
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12RS4 (19-End)
      • leader sequence (10-18)
      • modified residue (19)
      • modified residue (31)
      • modified residue (53)
      • modified residue (184)
    Domains in SCOPe 2.07: d2oqma1, d2oqma2
  • Chain 'B':
    Compound: hypothetical protein
    Species: Shewanella denitrificans [TaxId:192073]
    Gene: YP_561575.1, Sden_0562
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12RS4 (19-191)
      • leader sequence (14-18)
      • modified residue (19)
      • modified residue (31)
      • modified residue (53)
      • modified residue (184)
    Domains in SCOPe 2.07: d2oqmb2, d2oqmb3
  • Chain 'C':
    Compound: hypothetical protein
    Species: Shewanella denitrificans [TaxId:192073]
    Gene: YP_561575.1, Sden_0562
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12RS4 (19-191)
      • leader sequence (13-18)
      • modified residue (19)
      • modified residue (31)
      • modified residue (53)
      • modified residue (184)
    Domains in SCOPe 2.07: d2oqmc2, d2oqmc3
  • Chain 'D':
    Compound: hypothetical protein
    Species: Shewanella denitrificans [TaxId:192073]
    Gene: YP_561575.1, Sden_0562
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12RS4 (19-End)
      • leader sequence (12-18)
      • modified residue (19)
      • modified residue (31)
      • modified residue (53)
      • modified residue (184)
    Domains in SCOPe 2.07: d2oqmd2, d2oqmd3
  • Heterogens: EDO, FMT, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2oqmA (A:)
mgsdkihhhhhhenlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllns
rlaadqfnlirqvqiacdtakvgvarltgqletapkhddsettlaelrqriasvltyleg
fseadfanaatiqisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkd
ylgampykapil

    Sequence, based on observed residues (ATOM records): (download) 
    >2oqmA (A:)
hhenlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllnsrlaadqfnli
rqvqiacdtakvgvarltgqletapkhddsettlaelrqriasvltylegfseadfanaa
tiqisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkdylgampykap

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2oqmB (B:)
mgsdkihhhhhhenlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllns
rlaadqfnlirqvqiacdtakvgvarltgqletapkhddsettlaelrqriasvltyleg
fseadfanaatiqisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkd
ylgampykapil

    Sequence, based on observed residues (ATOM records): (download) 
    >2oqmB (B:)
lyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllnsrlaadqfnlirqvq
iacdtakvgvarltgqletapkhddsettlaelrqriasvltylegfseadfanaatiqi
sqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkdylgampykapil

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2oqmC (C:)
mgsdkihhhhhhenlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllns
rlaadqfnlirqvqiacdtakvgvarltgqletapkhddsettlaelrqriasvltyleg
fseadfanaatiqisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkd
ylgampykapil

    Sequence, based on observed residues (ATOM records): (download) 
    >2oqmC (C:)
nlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllnsrlaadqfnlirqv
qiacdtakvgvarltgqletapkhddsettlaelrqriasvltylegfseadfanaatiq
isqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkdylgampykapil

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2oqmD (D:)
mgsdkihhhhhhenlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllns
rlaadqfnlirqvqiacdtakvgvarltgqletapkhddsettlaelrqriasvltyleg
fseadfanaatiqisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkd
ylgampykapil

    Sequence, based on observed residues (ATOM records): (download) 
    >2oqmD (D:)
enlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllnsrlaadqfnlirq
vqiacdtakvgvarltgqletapkhddsettlaelrqriasvltylegfseadfanaati
qisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkdylgampykap