PDB entry 2ooy
View 2ooy on RCSB PDB site
Description: Crystal structure of the adenylate sensor from AMP-activated protein kinase complexed with ATP
Class: transferase
Keywords: AMPK, kinase, AMP, crystal structure, TRANSFERASE
Deposited on
2007-01-26, released
2007-02-06
The last revision prior to the SCOPe 2.05 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.88 Å
R-factor: 0.195
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: SNF1-like protein kinase ssp2
Species: Schizosaccharomyces pombe [TaxId:4896]
Gene: ssp2, SPCC74.03c
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d2ooya_ - Chain 'B':
Compound: SPCC1919.03c protein
Species: Schizosaccharomyces pombe [TaxId:4896]
Gene: SPCC1919.03c
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d2ooyb_ - Chain 'C':
Compound: SNF1-like protein kinase ssp2
Species: Schizosaccharomyces pombe [TaxId:4896]
Gene: ssp2, SPCC74.03c
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d2ooyc_ - Chain 'D':
Compound: SPCC1919.03c protein
Species: Schizosaccharomyces pombe [TaxId:4896]
Gene: SPCC1919.03c
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d2ooyd_ - Chain 'E':
Compound: Hypothetical protein C1556.08c in chromosome I
Species: Schizosaccharomyces pombe [TaxId:4896]
Gene: SPAC1556.08c, SPAC1F12.01c
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d2ooye1, d2ooye2 - Chain 'G':
Compound: Hypothetical protein C1556.08c in chromosome I
Species: Schizosaccharomyces pombe [TaxId:4896]
Gene: SPAC1556.08c, SPAC1F12.01c
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d2ooyg1, d2ooyg2 - Heterogens: FLC, ATP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2ooyA (A:)
sqstrkksrrnkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiks
rweiphckregkntyayielqlyevmpgcfmldvksngykdiyshpertadhgmddlkss
fpfldlcamlvcklfsa
Sequence, based on observed residues (ATOM records): (download)
>2ooyA (A:)
srrnkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiksrweiphc
kregkntyayielqlyevmpgcfmldvksngykdiyshpertadhgmddlkssfpfldlc
amlvcklfs
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2ooyB (B:)
mseseqysteipafltsntlqelklpkppslpphlekcilnsntaykedqsvlpnpnhvl
lnhlaaantqlgvlalsattryhrkyvttamfknfdv
Sequence, based on observed residues (ATOM records): (download)
>2ooyB (B:)
eqysteipafltsntlqelklpkppslpphlekcilnsntaykedqsvlpnpnhvllnhl
aaantqlgvlalsattryhrkyvttamfknfd
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2ooyC (C:)
sqstrkksrrnkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiks
rweiphckregkntyayielqlyevmpgcfmldvksngykdiyshpertadhgmddlkss
fpfldlcamlvcklfsa
Sequence, based on observed residues (ATOM records): (download)
>2ooyC (C:)
nkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiksrweiphckre
gkntyayielqlyevmpgcfmldvksngykdiyddlkssfpfldlcamlvcklfs
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2ooyD (D:)
mseseqysteipafltsntlqelklpkppslpphlekcilnsntaykedqsvlpnpnhvl
lnhlaaantqlgvlalsattryhrkyvttamfknfdv
Sequence, based on observed residues (ATOM records): (download)
>2ooyD (D:)
qysteipafltsntlqelklpkppslpphlekcilnsntaykedqsvlpnpnhvllnhla
aantqlgvlalsattryhrkyvttamfknfd
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>2ooyE (E:)
mdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsaplw
dseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippetiy
vhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketamlr
vplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhli
qdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkle
gilsladilnyiiydktttpgvpeqtdnfesav
- Chain 'G':
Sequence, based on SEQRES records: (download)
>2ooyG (G:)
mdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsaplw
dseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippetiy
vhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketamlr
vplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhli
qdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkle
gilsladilnyiiydktttpgvpeqtdnfesav
Sequence, based on observed residues (ATOM records): (download)
>2ooyG (G:)
mdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsaplw
dseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippetiy
vhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketamlr
vplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhli
qdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkle
gilsladilnyiiydktdnfesav