PDB entry 2ood
View 2ood on RCSB PDB site
Description: Crystal structure of guanine deaminase from Bradyrhizobium japonicum
Class: hydrolase
Keywords: PSI-II, PSI-2, 9231a, guanine deaminase, guanine, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, HYDROLASE
Deposited on
2007-01-25, released
2007-02-20
The last revision prior to the SCOPe 2.01 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.62 Å
R-factor: 0.186
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Blr3880 protein
Species: Bradyrhizobium japonicum [TaxId:224911]
Gene: bII3846, blr3880
Database cross-references and differences (RAF-indexed):
- Uniprot Q89NG0 (3-466)
- cloning artifact (2)
- modified residue (37)
- modified residue (157)
- modified residue (284)
- modified residue (320)
- modified residue (334)
- modified residue (346)
- modified residue (439)
- modified residue (444-445)
- modified residue (458)
Domains in SCOPe 2.01: d2ooda1, d2ooda2 - Heterogens: ZN, GUN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2oodA (A:)
mslttvgirgtffdfvddpwkhigneqaaarfhqdglmvvtdgvikafgpyekiaaahpg
veithikdriivpgfidghihlpqtrvlgaygeqllpwlqksiypeeikykdrnyaregv
krfldallaagtttcqaftssspvateelfeeasrrnmrviagltgidrnapaefidtpe
nfyrdskrliaqyhdkgrnlyaitprfafgaspellkacqrlkhehpdcwvnthisenpa
ecsgvlvehpdcqdylgvyekfdlvgpkfsgghgvylsnnefrrmskkgaavvfcpcsnl
flgsglfrlgratdpehrvkmsfgtdvgggnrfsmisvlddaykvgmcnntlldgsidps
rkdlaeaernklspyrgfwsvtlggaeglyiddklgnfepgkeadfvaldpnggqlaqpw
hqsliadgagprtvdeaasmlfavmmvgddrcvdetwvmgkrlykkseghhhhhh
Sequence, based on observed residues (ATOM records): (download)
>2oodA (A:)
lttvgirgtffdfvddpwkhigneqaaarfhqdglmvvtdgvikafgpyekiaaahpgve
ithikdriivpgfidghihlpqtrvlgaygeqllpwlqksiypeeikykdrnyaregvkr
fldallaagtttcqaftssspvateelfeeasrrnmrviagltgidrnapaefidtpenf
yrdskrliaqyhdkgrnlyaitprfafgaspellkacqrlkhehpdcwvnthisenpaec
sgvlvehpdcqdylgvyekfdlvgpkfsgghgvylsnnefrrmskkgaavvfcpcsnlfl
gsglfrlgratdpehrvkmsfgtdvgggnrfsmisvlddaykvgmcnntlldgsidpsrk
dlaeaernklspyrgfwsvtlggaeglyiddklgnfepgkeadfvaldpnggqlaqpwhq
sligagprtvdeaasmlfavmmvgddrcvdetwvmgkrlykks