PDB entry 2ol3

View 2ol3 on RCSB PDB site
Description: crystal structure of BM3.3 ScFV TCR in complex with PBM8-H-2KBM8 MHC class I molecule
Class: immune system
Keywords: T CELL RECEPTOR, CLASS I MHC, H-2KBm8, TCR-PMHC COMPLEX, IMMUNE SYSTEM
Deposited on 2007-01-18, released 2007-04-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: bm3.3 T-cell receptor alpha-chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ol3a1
  • Chain 'B':
    Compound: bm3.3 T-cell receptor beta-chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ol3b_
  • Chain 'H':
    Compound: allogeneic h-2kbm8 MHC class I molecule
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ol3h1, d2ol3h2
  • Chain 'L':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (1-99)
      • initiating methionine (0)
    Domains in SCOPe 2.08: d2ol3l2, d2ol3l3
  • Chain 'P':
    Compound: naturally processed octapeptide pbm8
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ol3A (A:)
qkvtqtqtsisvmekttvtmdcvyetqdssyflfwykqtasgeivflirqdsykkenatv
ghyslnfqkpkssigliitatqiedsavyfcamrgdyggsgnklifgtgtllsvkpgsad
dakkdaakkddakkdaakkdgs

    Sequence, based on observed residues (ATOM records): (download) 
    >2ol3A (A:)
qkvtqtqtsisvmekttvtmdcvyetqdssyflfwykqtasgeivflirqdsykkenatv
ghyslnfqkpkssigliitatqiedsavyfcamrgdyggsgnklifgtgtllsvkpgs

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2ol3B (B:)
vtlleqnprwrlvprgqavnlrcilknsqypwmswyqqdlqkqlqwlftlrspgdkevks
lpgadylatrvtdtelrlqvanmsqgrtlyctcsadrvgntlyfgegsrlivv

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2ol3H (H:)
gphslryfvtavsrpglgeprfisvgyvdntefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrweppps

    Sequence, based on observed residues (ATOM records): (download) 
    >2ol3H (H:)
gphslryfvtavsrpglgeprfisvgyvdntefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrwep

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2ol3L (L:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'P':
    No sequence available.