PDB entry 2okd

View 2okd on RCSB PDB site
Description: High Resolution Crystal Structures of Vaccinia Virus dUTPase
Class: hydrolase
Keywords: Fold, jelly-roll, Superfamily, dUTPase-like, forms tight trimer through an additional beta-sheet in each subunit, subunit beta-sheets are orthogonally packed around the three-fold axis, HYDROLASE
Deposited on 2007-01-16, released 2007-05-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.209
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxyuridine 5'-triphosphate nucleotidohydrolase
    Species: Vaccinia virus [TaxId:10245]
    Gene: dut
    Database cross-references and differences (RAF-indexed):
    • GB AAO89320
      • engineered (27)
    Domains in SCOPe 2.08: d2okda_
  • Chain 'B':
    Compound: deoxyuridine 5'-triphosphate nucleotidohydrolase
    Species: Vaccinia virus [TaxId:10245]
    Gene: dut
    Database cross-references and differences (RAF-indexed):
    • GB AAO89320
      • engineered (27)
    Domains in SCOPe 2.08: d2okdb_
  • Chain 'C':
    Compound: deoxyuridine 5'-triphosphate nucleotidohydrolase
    Species: Vaccinia virus [TaxId:10245]
    Gene: dut
    Database cross-references and differences (RAF-indexed):
    • GB AAO89320
      • engineered (27)
    Domains in SCOPe 2.08: d2okdc_
  • Heterogens: CL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2okdA (A:)
mfnmninspvrfvketnraksptrqspgaagydlysaydytippgerqliktdismsmpk
fcygriaprsglslkgidigggvidedyrgnigvilinngkctfnvntgdriaqliyqri
yypeleevqsldstnrgdqgfgstglr

    Sequence, based on observed residues (ATOM records): (download) 
    >2okdA (A:)
pvrfvketnraksptrqspgaagydlysaydytippgerqliktdismsmpkfcygriap
rsglslkgidigggvidedyrgnigvilinngkctfnvntgdriaqliyqriyypeleev
qsld

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2okdB (B:)
mfnmninspvrfvketnraksptrqspgaagydlysaydytippgerqliktdismsmpk
fcygriaprsglslkgidigggvidedyrgnigvilinngkctfnvntgdriaqliyqri
yypeleevqsldstnrgdqgfgstglr

    Sequence, based on observed residues (ATOM records): (download) 
    >2okdB (B:)
pvrfvketnraksptrqspgaagydlysaydytippgerqliktdismsmpkfcygriap
rsglslkgidigggvidedyrgnigvilinngkctfnvntgdriaqliyqriyypeleev
qsl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2okdC (C:)
mfnmninspvrfvketnraksptrqspgaagydlysaydytippgerqliktdismsmpk
fcygriaprsglslkgidigggvidedyrgnigvilinngkctfnvntgdriaqliyqri
yypeleevqsldstnrgdqgfgstglr

    Sequence, based on observed residues (ATOM records): (download) 
    >2okdC (C:)
nspvrfvketnraksptrqspgaagydlysaydytippgerqliktdismsmpkfcygri
aprsglslkgidigggvidedyrgnigvilinngkctfnvntgdriaqliyqriyypele
evqsl