PDB entry 2oj5

View 2oj5 on RCSB PDB site
Description: Crystal Structure of Reovirus T3D Attachment Protein Sigma1 head domain wild-type at 1.75 A resolution
Class: Viral protein
Keywords: beta-barrel, beta-spiral repeat, aspartic acid cluster, greek key motif, trimer, Viral protein
Deposited on 2007-01-12, released 2007-02-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.232
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Viral attachment protein sigma 1
    Species: Reovirus sp. [TaxId:10891]
    Gene: S1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2oj5a1
  • Chain 'B':
    Compound: Viral attachment protein sigma 1
    Species: Reovirus sp. [TaxId:10891]
    Gene: S1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2oj5b1, d2oj5b2
  • Chain 'C':
    Compound: Viral attachment protein sigma 1
    Species: Reovirus sp. [TaxId:10891]
    Gene: S1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2oj5c1, d2oj5c2
  • Chain 'D':
    Compound: Viral attachment protein sigma 1
    Species: Reovirus sp. [TaxId:10891]
    Gene: S1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2oj5d1
  • Chain 'E':
    Compound: Viral attachment protein sigma 1
    Species: Reovirus sp. [TaxId:10891]
    Gene: S1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2oj5e1
  • Chain 'F':
    Compound: Viral attachment protein sigma 1
    Species: Reovirus sp. [TaxId:10891]
    Gene: S1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2oj5f1, d2oj5f2
  • Heterogens: MG, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2oj5A (A:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records): (download) 
    >2oj5A (A:)
pnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihiclp
afdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqyms
knlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2oj5B (B:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records): (download) 
    >2oj5B (B:)
spnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihicl
pafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqym
sknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2oj5C (C:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records): (download) 
    >2oj5C (C:)
spnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihicl
pafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqym
sknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2oj5D (D:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records): (download) 
    >2oj5D (D:)
nlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihiclpa
fdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqymsk
nlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2oj5E (E:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records): (download) 
    >2oj5E (E:)
pnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihiclp
afdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqyms
knlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2oj5F (F:)
gsspnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihi
clpafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpq
ymsknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft

    Sequence, based on observed residues (ATOM records): (download) 
    >2oj5F (F:)
spnlrypiadvsggigmspnyrfrqsmwigivsysgsglnwrvqvnsdifivddyihicl
pafdgfsiadggdlslnfvtgllpplltgdtepafhndvvtygaqtvaiglssggtpqym
sknlwveqwqdgvlrlrvegggsithsnskwpamtvsyprsft