PDB entry 2ogr
View 2ogr on RCSB PDB site
Description: Crystal Structure of Yellow Fluorescent Protein from Zoanthus sp. at 1.8 A Resolution
Class: fluorescent protein
Keywords: GFP-like proteins, yellow fluorescent protein, Zoanthus sp., chromophore structure, tetramer structure, intermonomer interfaces
Deposited on
2007-01-08, released
2007-09-25
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.185
AEROSPACI score: 0.5
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: fluorescent protein fp538
Species: Zoanthus sp. [TaxId:105402]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U6Y4 (Start-230)
- modified residue (64)
- chromophore (65)
Domains in SCOPe 2.06: d2ogra_ - Chain 'B':
Compound: fluorescent protein fp538
Species: Zoanthus sp. [TaxId:105402]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U6Y4 (Start-230)
- modified residue (64)
- chromophore (65)
Domains in SCOPe 2.06: d2ogrb_ - Chain 'C':
Compound: fluorescent protein fp538
Species: Zoanthus sp. [TaxId:105402]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U6Y4 (Start-230)
- modified residue (64)
- chromophore (65)
Domains in SCOPe 2.06: d2ogrc_ - Chain 'D':
Compound: fluorescent protein fp538
Species: Zoanthus sp. [TaxId:105402]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U6Y4 (Start-230)
- modified residue (64)
- chromophore (65)
Domains in SCOPe 2.06: d2ogrd_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2ogrA (A:)
mahskhglkeemtmkyhmegcvnghkfvitgegigypfkgkqtinlcvieggplpfsedi
lsagfkygdrifteypqdivdyfknscpagytwgrsflfedgavcicnvditvsvkenci
yhksifngmnfpadgpvmkkmttnweascekimpvpkqgilkgdvsmylllkdggryrcq
fdtvykaksvpskmpewhfiqhkllredrsdaknqkwqltehaiafpsala
Sequence, based on observed residues (ATOM records): (download)
>2ogrA (A:)
hglkeemtmkyhmegcvnghkfvitgegigypfkgkqtinlcvieggplpfsedilsagf
kygdrifteypqdivdyfknscpagytwgrsflfedgavcicnvditvsvkenciyhksi
fngmnfpadgpvmkkmttnweascekimpvpkqgilkgdvsmylllkdggryrcqfdtvy
kaksvpskmpewhfiqhkllredrsdaknqkwqltehaiafpsala
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2ogrB (B:)
mahskhglkeemtmkyhmegcvnghkfvitgegigypfkgkqtinlcvieggplpfsedi
lsagfkygdrifteypqdivdyfknscpagytwgrsflfedgavcicnvditvsvkenci
yhksifngmnfpadgpvmkkmttnweascekimpvpkqgilkgdvsmylllkdggryrcq
fdtvykaksvpskmpewhfiqhkllredrsdaknqkwqltehaiafpsala
Sequence, based on observed residues (ATOM records): (download)
>2ogrB (B:)
hglkeemtmkyhmegcvnghkfvitgegigypfkgkqtinlcvieggplpfsedilsagf
kygdrifteypqdivdyfknscpagytwgrsflfedgavcicnvditvsvkenciyhksi
fngmnfpadgpvmkkmttnweascekimpvpkqgilkgdvsmylllkdggryrcqfdtvy
kaksvpskmpewhfiqhkllredrsdaknqkwqltehaiafpsala
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2ogrC (C:)
mahskhglkeemtmkyhmegcvnghkfvitgegigypfkgkqtinlcvieggplpfsedi
lsagfkygdrifteypqdivdyfknscpagytwgrsflfedgavcicnvditvsvkenci
yhksifngmnfpadgpvmkkmttnweascekimpvpkqgilkgdvsmylllkdggryrcq
fdtvykaksvpskmpewhfiqhkllredrsdaknqkwqltehaiafpsala
Sequence, based on observed residues (ATOM records): (download)
>2ogrC (C:)
hglkeemtmkyhmegcvnghkfvitgegigypfkgkqtinlcvieggplpfsedilsagf
kygdrifteypqdivdyfknscpagytwgrsflfedgavcicnvditvsvkenciyhksi
fngmnfpadgpvmkkmttnweascekimpvpkqgilkgdvsmylllkdggryrcqfdtvy
kaksvpskmpewhfiqhkllredrsdaknqkwqltehaiafpsala
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2ogrD (D:)
mahskhglkeemtmkyhmegcvnghkfvitgegigypfkgkqtinlcvieggplpfsedi
lsagfkygdrifteypqdivdyfknscpagytwgrsflfedgavcicnvditvsvkenci
yhksifngmnfpadgpvmkkmttnweascekimpvpkqgilkgdvsmylllkdggryrcq
fdtvykaksvpskmpewhfiqhkllredrsdaknqkwqltehaiafpsala
Sequence, based on observed residues (ATOM records): (download)
>2ogrD (D:)
hglkeemtmkyhmegcvnghkfvitgegigypfkgkqtinlcvieggplpfsedilsagf
kygdrifteypqdivdyfknscpagytwgrsflfedgavcicnvditvsvkenciyhksi
fngmnfpadgpvmkkmttnweascekimpvpkqgilkgdvsmylllkdggryrcqfdtvy
kaksvpskmpewhfiqhkllredrsdaknqkwqltehaiafpsala