PDB entry 2od6

View 2od6 on RCSB PDB site
Description: Crystal structure of a dimeric ferredoxin-like protein (JCVI_PEP_1096682647733) from an environmental metagenome (unidentified marine microbe), Sorcerer II Global Ocean Sampling experiment at 1.85 A resolution
Class: structural genomics, unknown function
Keywords: JCVI_PEP_1096682647733, metagenomics, hypothetical protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2
Deposited on 2006-12-21, released 2007-01-23
The last revision prior to the SCOP 1.75 freeze date was dated 2007-04-24, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.198
AEROSPACI score: 0.58 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical protein
    Species: UNCULTURED MARINE ORGANISM, synthetic
    Domains in SCOP 1.75: d2od6a1
  • Chain 'B':
    Compound: hypothetical protein
    Species: UNCULTURED MARINE ORGANISM, synthetic
    Domains in SCOP 1.75: d2od6b1
  • Chain 'C':
    Compound: hypothetical protein
    Species: UNCULTURED MARINE ORGANISM, synthetic
    Domains in SCOP 1.75: d2od6c1
  • Chain 'D':
    Compound: hypothetical protein
    Species: UNCULTURED MARINE ORGANISM, synthetic
    Domains in SCOP 1.75: d2od6d1
  • Heterogens: OHA, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2od6A (A:)
gmaepkftsfttadfindvdmelfidavektapvwvkemksrgllkfsmnrvwnkgevfr
vvmtyeykdrasfeaniayledtfgknpvflqlvttakfttsrclvvmev

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2od6B (B:)
gmaepkftsfttadfindvdmelfidavektapvwvkemksrgllkfsmnrvwnkgevfr
vvmtyeykdrasfeaniayledtfgknpvflqlvttakfttsrclvvmev

    Sequence, based on observed residues (ATOM records): (download) 
    >2od6B (B:)
aepkftsfttadfindvdmelfidavektapvwvkemksrgllkfsmnrvwnkgevfrvv
mtyeykdrasfeaniayledtfgknpvflqlvttakfttsrclvvmev

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2od6C (C:)
gmaepkftsfttadfindvdmelfidavektapvwvkemksrgllkfsmnrvwnkgevfr
vvmtyeykdrasfeaniayledtfgknpvflqlvttakfttsrclvvmev

    Sequence, based on observed residues (ATOM records): (download) 
    >2od6C (C:)
epkftsfttadfindvdmelfidavektapvwvkemksrgllkfsmnrvwnkgevfrvvm
tyeykdrasfeaniayledtfgknpvflqlvttakfttsrclvvmev

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2od6D (D:)
gmaepkftsfttadfindvdmelfidavektapvwvkemksrgllkfsmnrvwnkgevfr
vvmtyeykdrasfeaniayledtfgknpvflqlvttakfttsrclvvmev

    Sequence, based on observed residues (ATOM records): (download) 
    >2od6D (D:)
aepkftsfttadfindvdmelfidavektapvwvkemksrgllkfsmnrvwnkgevfrvv
mtyeykdrasfeaniayledtfgknpvflqlvttakfttsrclvvmev