SCOP 1.73: Structural Classification of Proteins

PDB entry 2o8r

View 2o8r on RCSB PDB site
Description: Crystal Structure of Polyphosphate Kinase from Porphyromonas Gingivalis
Class: transferase
Keywords: KINASE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, NYSGRC, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, STRUCTURAL GENOMICS, New York Structural GenomiX Research Consortium, NYSGXRC
Deposited on 2006-12-12, released 2006-12-19
The last revision prior to the SCOP 1.73 freeze date was dated 2007-02-20, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.19
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Polyphosphate kinase
Species: Porphyromonas gingivalis
Gene: ppk
Database cross-references and differences (RAF-indexed):
- Uniprot Q7MTR1
  - engineered (14)
  - engineered (25)
  - engineered (145)
  - engineered (226)
  - engineered (269)
  - engineered (274)
  - engineered (307)
  - engineered (336)
  - engineered (361)
  - engineered (421)
  - engineered (432)
  - engineered (479)
  - engineered (515)
  - engineered (538)
  - engineered (542)
  - engineered (578)
  - engineered (592)
  - engineered (618)
  - engineered (636)
  - engineered (691)
Domains in SCOP 1.73: d2o8ra1, d2o8ra2, d2o8ra3, d2o8ra4
Chain 'B':
Compound: Polyphosphate kinase
Species: Porphyromonas gingivalis
Gene: ppk
Database cross-references and differences (RAF-indexed):
- Uniprot Q7MTR1
  - engineered (14)
  - engineered (25)
  - engineered (145)
  - engineered (226)
  - engineered (269)
  - engineered (274)
  - engineered (307)
  - engineered (336)
  - engineered (361)
  - engineered (421)
  - engineered (432)
  - engineered (479)
  - engineered (515)
  - engineered (538)
  - engineered (542)
  - engineered (578)
  - engineered (592)
  - engineered (636)
  - engineered (691)
Domains in SCOP 1.73: d2o8rb1, d2o8rb2, d2o8rb3, d2o8rb4
Heterogens: SO4, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2o8rA (A:)
msldvsaypffrrdmswlsfnervlmeaadrtlpvydrikflsifssnleefytvrvayh
qavlqkrrdrseaeedsdadahilqairetvirqdelyyrifydqilptleehgirlrth
apthpdhkaylrrffheeifpllypmlllpskvrtfirsgrvylavrlkeketdeaysya
llnvptdglprfvelprlqtdtfyyysflediikehldvvfpgyevmdsysikvsrdadl
lldaqrpedlpgeirkkvktrklgaptrfmydgrmpdevlryicsscdidpeeairsgny
vnlqdlamlpnpfaprletltpepllskhleqapslmegirrkdylihvpyytydyvvrl
lmeaaispdvseirltqyrvaenssiisaleaaaqsgkkvsvfvelkarfdeennlrlse
rmrrsgirivysmpglkvhaktalilyhtpagerpqgiallstgnfnettariysdttlm
tantdivhdvyrlfrildgdpeparfsrllvarynmgeaitnliereienvkrgkrgyml
lkmnglqdknvitqlyraseagveidlivrgicclvpdmpqsrnirvtrlvdmylehsri
wcfhnggkeevfissadwmkrnlynrietacpvldptlrreiidileiqlrdnikacrid
sslnniykhnsdekpvraqaaiyrylkgkeettpaakeghhhhhh

Sequence, based on observed residues (ATOM records): (download)

>2o8rA (A:)
saypffrrdmswlsfnervlmeaadrtlpvydrikflsifssnleefytvrvayhqavlq
khilqairetvirqdelyyrifydqilptleehgirlrthapthpdhkaylrrffheeif
pllypmlllpskvrtfirsgrvylavrlkeketdeaysyallnvptdglprfvelprlqt
dtfyyysflediikehldvvfpgyevmdsysikvsrdadllldaptrfmydgrmpdevlr
yicsscdidpeeairsgnyvnlqdlamlpnpfaprletltpepllskhleqapslmegir
rkdylihvpyytydyvvrllmeaaispdvseirltqyrvaenssiisaleaaaqsgkkvs
vfvelkarfnlrlsermrrsgirivysmpglkvhaktalilyhtpagerpqgiallstgn
fnettariysdttlmtantdivhdvyrlfrildgdpeparfsrllvarynmgeaitnlie
reienvkrgkrgymllkmnglqdknvitqlyraseagveidlivrgicclvpdmpqsrni
rvtrlvdmylehsriwcfhnggkeevfissadwmkrnlynrietacpvldptlrreiidi
leiqlrdnikacridsslnniykhnsdekpvraqaaiyrylkgkeett

Chain 'B':
Sequence, based on SEQRES records: (download)

>2o8rB (B:)
msldvsaypffrrdmswlsfnervlmeaadrtlpvydrikflsifssnleefytvrvayh
qavlqkrrdrseaeedsdadahilqairetvirqdelyyrifydqilptleehgirlrth
apthpdhkaylrrffheeifpllypmlllpskvrtfirsgrvylavrlkeketdeaysya
llnvptdglprfvelprlqtdtfyyysflediikehldvvfpgyevmdsysikvsrdadl
lldaqrpedlpgeirkkvktrklgaptrfmydgrmpdevlryicsscdidpeeairsgny
vnlqdlamlpnpfaprletltpepllskhleqapslmegirrkdylihvpyytydyvvrl
lmeaaispdvseirltqyrvaenssiisaleaaaqsgkkvsvfvelkarfdeennlrlse
rmrrsgirivysmpglkvhaktalilyhtpagerpqgiallstgnfnettariysdttlm
tantdivhdvyrlfrildgdpeparfsrllvarynmgeaitnliereienvkrgkrgyml
lkmnglqdknvitqlyraseagveidlivrgicclvpdmpqsrnirvtrlvdmylehsri
wcfhnggkeevfissadwmkrnlynrietacpvldptlrreiidileiqlrdnikacrid
sslnniykhnsdekpvraqaaiyrylkgkeettpaakeghhhhhh

Sequence, based on observed residues (ATOM records): (download)

>2o8rB (B:)
rdmswlsfnervlmeaadrtlpvydrikflsifssnleefytvrvaylqairetvirqde
lyyrifydqilptleehgirlrthapthpdhkaylrrffheeifpllypmlllpskvrtf
irsgrvylavrlkeketdeaysyallnvptdglprfvelprlqtdtfyyysflediikeh
ldvvfpgyevmdsysikvsrptrfmydgrmpdevlryiairsgnyvnlqdlamlpnpfap
rletltpepllskhleqapslmegirrkdylihvpyytydyvvrllmeaaispdvseirl
tqyrvaenssiisaleaaaqsgkkvsvfvelkarfdeennlrlsermrrsgirivysmpg
lkvhaktalilyhtpagerpqgiallstgnfnettariysdttlmtantdivhdvyrlfr
ildgdpeparfsrllvarynmgeaitnliereienvkrgkrgymllkmnglqdknvitql
yraseagveidlivrgicclvpdmpqsrnirvtrlvdmylehsriwcfhnggkeevfiss
adwlynrietacpvldptlrreiidileiqlrdnikaciykhnsdekpvraqaaiyrylk
gkeet