PDB entry 2o39

View 2o39 on RCSB PDB site
Description: Human Adenovirus type 11 knob in complex with domains SCR1 and SCR2 of CD46 (membrane cofactor protein, MCP)
Class: VIRAL PROTEIN/immune system
Keywords: Membrane cofactor protein, MCP, CD46, Adenovirus, fiber knob, Ad11, virus receptor complex, SCR, Short consensus repeat, CCP, complement control protein, VIRAL PROTEIN-immune system COMPLEX
Deposited on 2006-12-01, released 2007-01-09
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: 0.238
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fiber protein
    Species: Human adenovirus B [TaxId:343462]
    Gene: PIV
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2o39a1
  • Chain 'B':
    Compound: fiber protein
    Species: Human adenovirus B [TaxId:343462]
    Gene: PIV
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2o39b_
  • Chain 'C':
    Compound: Membrane cofactor protein
    Species: Homo sapiens [TaxId:9606]
    Gene: CD46, MCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2o39c1, d2o39c2
  • Chain 'D':
    Compound: Membrane cofactor protein
    Species: Homo sapiens [TaxId:9606]
    Gene: CD46, MCP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2o39d1, d2o39d2
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2o39A (A:)
dnintlwtgvnpteancqimnssesndckliltlvktgalvtafvyvigvsnnfnmltth
rninftaelffdstgnlltrlsslktplnhksgqnmatgaitnakgfmpsttaypfndns
rekenyiygtcyytasdrtafpidisvmlnrraindetsyciritwswntgdapevqtsa
ttlvtspftfyyiredd

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2o39B (B:)
dnintlwtgvnpteancqimnssesndckliltlvktgalvtafvyvigvsnnfnmltth
rninftaelffdstgnlltrlsslktplnhksgqnmatgaitnakgfmpsttaypfndns
rekenyiygtcyytasdrtafpidisvmlnrraindetsyciritwswntgdapevqtsa
ttlvtspftfyyiredd

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2o39C (C:)
ceepptfeameligkpkpyyeigervdykckkgyfyipplathticdrnhtwlpvsddac
yretcpyirdplngqavpangtyefgyqmhficnegyyligeeilycelkgsvaiwsgkp
picekv

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2o39D (D:)
ceepptfeameligkpkpyyeigervdykckkgyfyipplathticdrnhtwlpvsddac
yretcpyirdplngqavpangtyefgyqmhficnegyyligeeilycelkgsvaiwsgkp
picekv