PDB entry 2nyz

View 2nyz on RCSB PDB site
Description: Viral Chemokine Binding Protein M3 From Murine Gammaherpesvirus68 In Complex With The C- Chemokine XCL1
Class: viral protein/cytokine
Keywords: Viral Decoy Receptor, Chemokine, Protein-Protein Complex, VIRAL PROTEIN/CYTOKINE COMPLEX
Deposited on 2006-11-21, released 2007-12-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.219
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hypothetical protein GAMMAHV.M3
    Species: Murid herpesvirus 4 [TaxId:33708]
    Gene: GAMMAHV.M3, M3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2nyza1
  • Chain 'B':
    Compound: Hypothetical protein GAMMAHV.M3
    Species: Murid herpesvirus 4 [TaxId:33708]
    Gene: GAMMAHV.M3, M3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2nyzb1
  • Chain 'D':
    Compound: Lymphotactin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Lymphotactin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2nyzA (A:)
ltlglapalsthssgvstqsvdlsqikrgdeiqahcltpaetevtecagilkdvlsknlh
elqglcnvknkmgvpwvsveelgqeiitgrlpfpsvggtpvndlvrvlvvaesntpeetp
eeefyayvelqtelytfglsddnvvftsdymtvwmidipksyvdvgmltratfleqwpga
kvtvmipysstftwcgelgaiseesapqpslsarspvcknsarystskfcevdgctaetg
mekmslltpfggppqqakmntcpcyykysvsplpamdhliladlagldsltspvyvmaay
fdsthenpvrpssklyhcalqmtshdgvwtstsseqcpirlvegqsqnvlqvrvaptsmp
nlvgvslmlegqqyrleyfgdh

    Sequence, based on observed residues (ATOM records): (download) 
    >2nyzA (A:)
hssgvstqsvdlsqikrgdeiqahcltpaetevtecagilkdvlsknlhelqglcnvknk
mgvpwvsveelgqeiitgrlpfpsvggtpvndlvrvlvvaesntpeetpeeefyayvelq
telytfglsddnvvftsdymtvwmidipksyvdvgmltratfleqwpgakvtvmipysst
ftwcgelgaiseesapqpslsarspvcknsarystskfcevdgctaetgmekmslltpfg
gppqqakmntcpcyykysvsplpamdhliladlagldsltspvyvmaayfdsthenpvrp
ssklyhcalqmtshdgvwtstsseqcpirlvegqsqnvlqvrvaptsmpnlvgvslmleg
qqyrleyfgdh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2nyzB (B:)
ltlglapalsthssgvstqsvdlsqikrgdeiqahcltpaetevtecagilkdvlsknlh
elqglcnvknkmgvpwvsveelgqeiitgrlpfpsvggtpvndlvrvlvvaesntpeetp
eeefyayvelqtelytfglsddnvvftsdymtvwmidipksyvdvgmltratfleqwpga
kvtvmipysstftwcgelgaiseesapqpslsarspvcknsarystskfcevdgctaetg
mekmslltpfggppqqakmntcpcyykysvsplpamdhliladlagldsltspvyvmaay
fdsthenpvrpssklyhcalqmtshdgvwtstsseqcpirlvegqsqnvlqvrvaptsmp
nlvgvslmlegqqyrleyfgdh

    Sequence, based on observed residues (ATOM records): (download) 
    >2nyzB (B:)
hssgvstqsvdlsqikrgdeiqahcltpaetevtecagilkdvlsknlhelqglcnvknk
mgvpwvsveelgqeiitgrlpfpsvggtpvndlvrvlvvaesntpeetpeeefyayvelq
telytfglsddnvvftsdymtvwmidipksyvdvgmltratfleqwpgakvtvmipysst
ftwcgelgaiseesapqpslsarspvcknsarystskfcevdgctaetgmekmslltpfg
gppqqakmntcpcyykysvsplpamdhliladlagldsltspvyvmaayfdsthenpvrp
ssklyhcalqmtshdgvwtstsseqcpirlvegqsqnvlqvrvaptsmpnlvgvslmleg
qqyrleyfgdh

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.