PDB entry 2nyy

View 2nyy on RCSB PDB site
Description: Crystal structure of botulinum neurotoxin type A complexed with monoclonal antibody CR1
Class: toxin/immune system
Keywords: botulinum, neurotoxin, fab, protein antibody complex, toxin-immune system complex
Deposited on 2006-11-21, released 2006-12-26
The last revision prior to the SCOPe 2.04 freeze date was dated 2013-09-18, with a file datestamp of 2013-09-13.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: 0.208
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Botulinum neurotoxin type A
    Species: Clostridium botulinum [TaxId:1491]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2nyya1, d2nyya2, d2nyya3, d2nyya4
  • Chain 'C':
    Compound: CR1 monoclonal antibody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2NYY (0-End)
    Domains in SCOPe 2.04: d2nyyc1, d2nyyc2
  • Chain 'D':
    Compound: CR1 monoclonal antibody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2NYY
    Domains in SCOPe 2.04: d2nyyd1, d2nyyd2
  • Heterogens: ZN, CA

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2nyyA (A:)
    pfvnkqfnykdpvngvdiayikipnvgqmqpvkafkihnkiwviperdtftnpeegdlnp
    ppeakqvpvsyydstylstdnekdnylkgvtklferiystdlgrmlltsivrgipfwggs
    tidtelkvidtncinviqpdgsyrseelnlviigpsadiiqfecksfghevlnltrngyg
    stqyirfspdftfgfeeslevdtnpllgagkfatdpavtlahelihaghrlygiainpnr
    vfkvntnayyemsglevsfeelrtfgghdakfidslqenefrlyyynkfkdiastlnkak
    sivgttaslqymknvfkekyllsedtsgkfsvdklkfdklykmlteiytednfvkffkvl
    nrktylnfdkavfkinivpkvnytiydgfnlrntnlaanfngqnteinnmnftklknftg
    lfefykllcvrgiitsktksldkgynkalndlcikvnnwdlffspsednftndlnkgeei
    tsdtnieaaeenisldliqqyyltfnfdnepenisienlssdiigqlelmpnierfpngk
    kyeldkytmfhylraqefehgksrialtnsvneallnpsrvytffssdyvkkvnkateaa
    mflgwveqlvydftdetsevsttdkiaditiiipyigpalnignmlykddfvgalifsga
    villefipeiaipvlgtfalvsyiankvltvqtidnalskrnekwdevykyivtnwlakv
    ntqidlirkkmkealenqaeatkaiinyqynqyteeeknninfniddlssklnesinkam
    ininkflnqcsvsylmnsmipygvkrledfdaslkdallkyiydnrgtligqvdrlkdkv
    nntlstdipfqlskyvdnqrllstfteyikniintsilnlryesnhlidlsryaskinig
    skvnfdpidknqiqlfnlesskievilknaivynsmyenfstsfwiripkyfnsislnne
    ytiincmennsgwkvslnygeiiwtlqdtqeikqrvvfkysqminisdyinrwifvtitn
    nrlnnskiyingrlidqkpisnlgnihasnnimfkldgcrdthryiwikyfnlfdkelne
    keikdlydnqsnsgilkdfwgdylqydkpyymlnlydpnkyvdvnnvgirgymylkgprg
    svmttniylnsslyrgtkfiikkyasgnkdnivrnndrvyinvvvknkeyrlatnasqag
    vekilsaleipdvgnlsqvvvmkskndqgitnkckmnlqdnngndigfigfhqfnniakl
    vasnwynrqierssrtlgcswefipvddgwgerpl
    

    Sequence, based on observed residues (ATOM records): (download)
    >2nyyA (A:)
    pfvnkqfnykdpvngvdiayikipnvgqmqpvkafkihnkiwviperdtftnpeegdlnp
    ppeakqvpvsyydstylstdnekdnylkgvtklferiystdlgrmlltsivrgipfwggs
    tidtelkvidtncinviqpdgsyrseelnlviigpsadiiqfecksfghevlnltrngyg
    stqyirfspdftfgfeeslevdtnpllgagkfatdpavtlahelihaghrlygiainpnr
    vfkvntnayyemsglevsfeelrtfgghdakfidslqenefrlyyynkfkdiastlnkak
    sivgttaslqymknvfkekyllsedtsgkfsvdklkfdklykmlteiytednfvkffkvl
    nrktylnfdkavfkinivpkvnytiydgfnlrntnlaanfngqnteinnmnftklknftg
    lfefykllcvrlcikvnnwdlffspsednftndlnkgeeitsdtnieanisldliqqyyl
    tfnfdnepenisienlssdiigqlelmpnierfpngkkyeldkytmfhylraqefehgks
    rialtnsvneallnpsrvytffssdyvkkvnkateaamflgwveqlvydftdetsevsia
    ditiiipyigpalnignmlykddfvgalifsgavillefipeiaipvlgtfalvsyiank
    vltvqtidnalskrnekwdevykyivtnwlakvntqidlirkkmkealenqaeatkaiin
    yqynqyteeeknninfniddlssklnesinkamininkflnqcsvsylmnsmipygvkrl
    edfdaslkdallkyiydnrgtligqvdrlkdkvnntlstdipfqlskyvdnqrllstfte
    yikniintsilnlryesnhlidlsryaskinigskvnfdpidknqiqlfnlesskievil
    knaivynsmyenfstsfwiripkyfnsislnneytiincmennsgwkvslnygeiiwtlq
    dtqeikqrvvfkysqminisdyinrwifvtitnnrlnnskiyingrlidqkpisnlgnih
    asnnimfkldgcrdthryiwikyfnlfdkelnekeikdlydnqsnsgilkdfwgdylqyd
    kpyymlnlydpnkyvdvnnvgirgymylkgprgsvmttniylnsslyrgtkfiikkyasg
    nkdnivrnndrvyinvvvknkeyrlatnasqagvekilsaleipdvgnlsqvvvmksknd
    qgitnkckmnlqdnngndigfigfhqfnniaklvasnwynrqierssrtlgcswefipvd
    dgwgerp
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2nyyC (C:)
    eivltqspatlslspgeratiscrasesvdsyghsfmqwyqqkpgqaprlliyrasnlep
    giparfsgsgsgtdftltisslepedfavyycqqgnevpftfgqgtkveikrtvaapsvf
    ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
    stltlskadyekhkvyacevthqglsspvtksfnrgec
    

    Sequence, based on observed residues (ATOM records): (download)
    >2nyyC (C:)
    eivltqspatlslspgeratiscrasesvdsyghsfmqwyqqkpgqaprlliyrasnlep
    giparfsgsgsgtdftltisslepedfavyycqqgnevpftfgqgtkveikrtvaapsvf
    ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
    stltlskadyekhkvyacevthqglsspvtksfnrg
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2nyyD (D:)
    qvqlqesggglvqpggslrlscaasgftfkydymywvrqapgkglewvatisdggsytyy
    sdsvegrfttsrdnskntlylqmnslraedtaiyycsryryddamdywgqgtlvtvssas
    tkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
    yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2nyyD (D:)
    vqlqesggglvqpggslrlscaasgftfkydymywvrqapgkglewvatisdggsytyys
    dsvegrfttsrdnskntlylqmnslraedtaiyycsryryddamdywgqgtlvtvssast
    kgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
    slssvvtvpssslgtqtyicnvnhkpsntkvdkkvep