PDB entry 2ntc

View 2ntc on RCSB PDB site
Description: Crystal Structure of sv40 large T antigen origin binding domain with DNA
Class: DNA binding protein/DNA
Keywords: origin binding domain; protein-DNA complex; replication, DNA binding protein-DNA COMPLEX
Deposited on 2006-11-07, released 2007-02-13
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.209
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Gene: large T antigen
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ntca_
  • Chain 'B':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Gene: large T antigen
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ntcb_
  • Chain 'C':
    Compound: 21-nt PEN element of the SV40 DNA origin
  • Chain 'W':
    Compound: 21-nt PEN element of the SV40 DNA origin
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ntcA (A:)
gskvedpkdfpsellsflshavfsnrtlacfaiyttkekaallykkimekysvtfisrhn
synhnilffltphrhrvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieesl
pgglkehdfnpess

    Sequence, based on observed residues (ATOM records): (download) 
    >2ntcA (A:)
vedpkdfpsellsflshavfsnrtlacfaiyttkekaallykkimekysvtfisrhnsyn
hnilffltphrhrvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgg
lkehdfn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ntcB (B:)
gskvedpkdfpsellsflshavfsnrtlacfaiyttkekaallykkimekysvtfisrhn
synhnilffltphrhrvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieesl
pgglkehdfnpess

    Sequence, based on observed residues (ATOM records): (download) 
    >2ntcB (B:)
edpkdfpsellsflshavfsnrtlacfaiyttkekaallykkimekysvtfisrhnsynh
nilffltphrhrvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpggl
kehdfn

  • Chain 'C':
    No sequence available.

  • Chain 'W':
    No sequence available.