PDB entry 2np5

View 2np5 on RCSB PDB site
Description: Crystal structure of a transcriptional regulator (RHA1_ro04179) from Rhodococcus sp. Rha1.
Class: transcription
Keywords: tetR family, transcriptional regulator, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSCRIPTION
Deposited on 2006-10-26, released 2006-11-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.179
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcriptional regulator
    Species: Rhodococcus sp. [TaxId:101510]
    Gene: RHA1_ro04179
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0S914
      • modified residue (55)
      • modified residue (88)
      • modified residue (105)
    Domains in SCOPe 2.08: d2np5a1, d2np5a2
  • Chain 'B':
    Compound: Transcriptional regulator
    Species: Rhodococcus sp. [TaxId:101510]
    Gene: RHA1_ro04179
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0S914
      • modified residue (55)
      • modified residue (88)
      • modified residue (105)
    Domains in SCOPe 2.08: d2np5b1, d2np5b2
  • Chain 'C':
    Compound: Transcriptional regulator
    Species: Rhodococcus sp. [TaxId:101510]
    Gene: RHA1_ro04179
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0S914
      • modified residue (55)
      • modified residue (88)
      • modified residue (105)
    Domains in SCOPe 2.08: d2np5c1, d2np5c2
  • Chain 'D':
    Compound: Transcriptional regulator
    Species: Rhodococcus sp. [TaxId:101510]
    Gene: RHA1_ro04179
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0S914
      • modified residue (55)
      • modified residue (88)
      • modified residue (105)
    Domains in SCOPe 2.08: d2np5d1, d2np5d2
  • Heterogens: LMT, NDS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2np5A (A:)
    mrerrysstsperlaaalfdvaaesglegasvrevakragvsigavqhhfstkdemfafa
    lrtlvdkllarlseverggdparalfaamsqllpldearsreahvmaafavraatspsla
    eirrktlftirtglsavligigtpeaetraalllatvdglaldaigspalyppeylehal
    diqigmilqgadvvpsssielas
    

    Sequence, based on observed residues (ATOM records): (download)
    >2np5A (A:)
    tsperlaaalfdvaaesglegasvrevakragvsigavqhhfstkdemfafalrtlvdkl
    larlseverggdparalfaamsqllpldearsreahvmaafavraatspslaeirrktlf
    tirtglsavligigtpeaetraalllatvdglaldaigspalyppeylehaldiqigmil
    qgadvvp
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2np5B (B:)
    mrerrysstsperlaaalfdvaaesglegasvrevakragvsigavqhhfstkdemfafa
    lrtlvdkllarlseverggdparalfaamsqllpldearsreahvmaafavraatspsla
    eirrktlftirtglsavligigtpeaetraalllatvdglaldaigspalyppeylehal
    diqigmilqgadvvpsssielas
    

    Sequence, based on observed residues (ATOM records): (download)
    >2np5B (B:)
    tsperlaaalfdvaaesglegasvrevakragvsigavqhhfstkdemfafalrtlvdkl
    larlseverggdparalfaamsqllpldearsreahvmaafavraatspslaeirrktlf
    tirtglsavligigtpeaetraalllatvdglaldaigspalyppeylehaldiqigmil
    qgadvvp
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2np5C (C:)
    mrerrysstsperlaaalfdvaaesglegasvrevakragvsigavqhhfstkdemfafa
    lrtlvdkllarlseverggdparalfaamsqllpldearsreahvmaafavraatspsla
    eirrktlftirtglsavligigtpeaetraalllatvdglaldaigspalyppeylehal
    diqigmilqgadvvpsssielas
    

    Sequence, based on observed residues (ATOM records): (download)
    >2np5C (C:)
    sperlaaalfdvaaesglegasvrevakragvsigavqhhfstkdemfafalrtlvdkll
    arlseverggdparalfaamsqllpldearsreahvmaafavraatspslaeirrktlft
    irtglsavligigtpeaetraalllatvdglaldaigspalyppeylehaldiqigmilq
    gadv
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2np5D (D:)
    mrerrysstsperlaaalfdvaaesglegasvrevakragvsigavqhhfstkdemfafa
    lrtlvdkllarlseverggdparalfaamsqllpldearsreahvmaafavraatspsla
    eirrktlftirtglsavligigtpeaetraalllatvdglaldaigspalyppeylehal
    diqigmilqgadvvpsssielas
    

    Sequence, based on observed residues (ATOM records): (download)
    >2np5D (D:)
    sperlaaalfdvaaesglkdemfafalrtlvdkllarlseverggdparalfaamsqllp
    ldearsreahvmaafavraatspslaeirrktlftirtglsavligigtpeaetraalll
    atvdglaldaigspalyppeylehaldiqigmilqgad