PDB entry 2nap

View 2nap on RCSB PDB site
Description: dissimilatory nitrate reductase (nap) from desulfovibrio desulfuricans
Class: oxidoreductase
Keywords: nitrogenous acceptor, dissimilatory nitrate reductase, crystal structure, multiwavelength anomalous diffraction, molybdopterin cofactor, [4fe-4s] cluster, oxidoreductase
Deposited on 1998-09-18, released 1999-09-19
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.218
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (periplasmic nitrate reductase)
    Species: Desulfovibrio desulfuricans [TaxId:876]
    Database cross-references and differences (RAF-indexed):
    • GB CAA77019 (Start-722)
      • conflict (36)
    Domains in SCOPe 2.06: d2napa1, d2napa2
  • Heterogens: SF4, MO, MGD, MES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2napA (A:)
adnrpekwvkgvcrycgtgcgvlvgvkdgkavaiqgnpnnhnagllclkgsllipvlnsk
ervtqplvrrhkggklepvswdealdlmasrfrssidmygpnsvawygsgqclteesyva
nkifkggfgtnnvdgnprlcmasavggyvtsfgkdepmgtyadidqatcffiigsntsea
hpvlfrriarrkqvepgvkiivadprrtntsriadmhvafrpgtdlafmhsmawviinee
ldnprfwqryvnfmdaegkpsdfegykaflenyrpekvaeicrvpveqiygaarafaesa
atmslwcmginqrvqgvfannlihnlhlitgqicrpgatsfsltgqpnacggvrdggals
hllpagraipnakhraemeklwglpegriapepgyhtvalfealgrgdvkcmiicetnpa
htlpnlnkvhkamshpesfivcieafpdavtleyadlvlppafwcerdgvygcgerrysl
tekavdppgqcrptvntlvefarragvdpqlvnfrnaedvwnewrmvskgttydfwgmtr
erlrkesgliwpcpsedhpgtslryvrgqdpcvpadhpdrfffygkpdgraviwmrpakg
aaeepdaeyplyltsmrvidhwhtatmtgkvpelqkanpiafveineedaartgikhgds
vivetrrdamelparvsdvcrpgliavpffdpkklvnklfldatdpvsrepeykicaarv
rka

    Sequence, based on observed residues (ATOM records): (download) 
    >2napA (A:)
rpekwvkgvcrycgtgcgvlvgvkdgkavaiqgnpnnhnagllclkgsllipvlnskerv
tqplvrrhkggklepvswdealdlmasrfrssidmygpnsvawygsgqclteesyvanki
fkggfgtnnvdgnprlcmasavggyvtsfgkdepmgtyadidqatcffiigsntseahpv
lfrriarrkqvepgvkiivadprrtntsriadmhvafrpgtdlafmhsmawviineeldn
prfwqryvnfmdaegkpsdfegykaflenyrpekvaeicrvpveqiygaarafaesaatm
slwcmginqrvqgvfannlihnlhlitgqicrpgatsfsltgqpnacggvrdggalshll
pagraipnakhraemeklwglpegriapepgyhtvalfealgrgdvkcmiicetnpahtl
pnlnkvhkamshpesfivcieafpdavtleyadlvlppafwcerdgvygcgerrysltek
avdppgqcrptvntlvefarragvdpqlvnfrnaedvwnewrmvskgttydfwgmtrerl
rkesgliwpcpsedhpgtslryvrgqdpcvpadhpdrfffygkpdgraviwmrpakgaae
epdaeyplyltsmrvidhwhtatmtgkvpelqkanpiafveineedaartgikhgdsviv
etrrdamelparvsdvcrpgliavpffdpkklvnklfldatdpvsrepeykicaarvrka