PDB entry 2knb
View 2knb on RCSB PDB site
Description: Solution NMR structure of the parkin Ubl domain in complex with the endophilin-A1 SH3 domain
Class: protein binding
Keywords: Ubl, SH3, parkin, endophilin, Cell junction, Cell membrane, Cell projection, Endoplasmic reticulum, Ligase, Membrane, Metal-binding, Nucleus, Postsynaptic cell membrane, S-nitrosylation, Synapse, Ubl conjugation pathway, Zinc-finger, Endocytosis, Lipid-binding, Phosphoprotein, SH3 domain, PROTEIN BINDING
Deposited on
2009-08-20, released
2009-12-22
The last revision prior to the SCOPe 2.07 freeze date was dated
2013-06-19, with a file datestamp of
2013-06-14.
Experiment type: NMR
Resolution: N/A
R-factor: N/A
AEROSPACI score: 0.05
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: E3 ubiquitin-protein ligase parkin
Species: Rattus norvegicus [TaxId:10116]
Gene: PARK2, PRKN
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2knba_ - Chain 'B':
Compound: Endophilin-A1
Species: Rattus norvegicus [TaxId:10116]
Gene: Sh3gl2, Sh3d2a, Sh3p4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2knbb_
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2knbA (A:)
gplgsmivfvrfnssygfpvevdsdtsifqlkevvakrqgvpadqlrvifagkelqnhlt
vqncdleqqsivhivqrpqrk
Sequence, based on observed residues (ATOM records): (download)
>2knbA (A:)
mivfvrfnssygfpvevdsdtsifqlkevvakrqgvpadqlrvifagkelqnhltvqncd
leqqsivhivqrpqrk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2knbB (B:)
gsrrasvgsdqpccralydfepenegelgfkegdiitltnqidenwyegmlhgqsgffpi
nyveilvalph
Sequence, based on observed residues (ATOM records): (download)
>2knbB (B:)
dqpccralydfepenegelgfkegdiitltnqidenwyegmlhgqsgffpinyveilval
ph