PDB entry 2k05
View 2k05 on RCSB PDB site
Description: Structure of SDF1 in complex with the CXCR4 N-terminus containing sulfotyrosines at postitions 7, 12 and 21
Class: cytokine
Keywords: stromal cell derived factor-1, SDF1-alpha, CXCL12, CXCR4, chemokine, sulfotyrosine, locked dimer, Alternative splicing, Chemotaxis, Cytokine, Growth factor, Secreted, G-protein coupled receptor, Glycoprotein, Host-virus interaction, Membrane, Receptor, Sulfation, Transducer, Transmembrane
Deposited on
2008-01-24, released
2008-10-28
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-02-19, with a file datestamp of
2020-02-14.
Experiment type: NMR
Resolution: N/A
R-factor: N/A
AEROSPACI score: 0.04
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Stromal cell-derived factor 1
Species: Homo sapiens [TaxId:9606]
Gene: CXCL12, SDF1, SDF1A, SDF1B
Database cross-references and differences (RAF-indexed):
- Uniprot P48061
- engineered (37)
- engineered (66)
Domains in SCOPe 2.08: d2k05a_ - Chain 'B':
Compound: C-X-C chemokine receptor type 4
Species: Homo sapiens [TaxId:9606]
Gene: CXCR4
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Stromal cell-derived factor 1
Species: Homo sapiens [TaxId:9606]
Gene: CXCL12, SDF1, SDF1A, SDF1B
Database cross-references and differences (RAF-indexed):
- Uniprot P48061 (2-69)
- engineered (37)
- engineered (66)
Domains in SCOPe 2.08: d2k05c_ - Chain 'D':
Compound: C-X-C chemokine receptor type 4
Species: Homo sapiens [TaxId:9606]
Gene: CXCR4
Database cross-references and differences (RAF-indexed):
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2k05A (A:)
gmkpvslsyrcpcrffeshvaranvkhlkilntpncacqivarlknnnrqvcidpklkwi
qeylekclnk
Sequence, based on observed residues (ATOM records): (download)
>2k05A (A:)
kpvslsyrcpcrffeshvaranvkhlkilntpncacqivarlknnnrqvcidpklkwiqe
ylekclnk
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2k05C (C:)
gmkpvslsyrcpcrffeshvaranvkhlkilntpncacqivarlknnnrqvcidpklkwi
qeylekclnk
Sequence, based on observed residues (ATOM records): (download)
>2k05C (C:)
kpvslsyrcpcrffeshvaranvkhlkilntpncacqivarlknnnrqvcidpklkwiqe
ylekclnk
- Chain 'D':
No sequence available.