PDB entry 2jdl

View 2jdl on RCSB PDB site
Description: structure of c-terminal region of acidic p2 ribosomal protein complexed with trichosanthin
Class: hydrolase
Keywords: ribosome inactiviating protein, ribosomal protein, protein synthesis inhibitor, toxin, hydrolase, plant defense, antiviral protein
Deposited on 2007-01-11, released 2008-02-05
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-10, with a file datestamp of 2009-02-06.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.167
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribosome-inactivating protein alpha-trichosanthin
    Species: TRICHOSANTHES KIRILOWII [TaxId:3677]
    Database cross-references and differences (RAF-indexed):
    • PDB 2JDL (0-10)
    • Uniprot P09989 (1-246)
    Domains in SCOPe 2.06: d2jdla_
  • Chain 'B':
    Compound: ribosome-inactivating protein alpha-trichosanthin
    Species: TRICHOSANTHES KIRILOWII [TaxId:3677]
    Database cross-references and differences (RAF-indexed):
    • PDB 2JDL (0-10)
    • Uniprot P09989 (1-246)
    Domains in SCOPe 2.06: d2jdlb_
  • Chain 'C':
    Compound: acidic ribosomal protein p2
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'D':
    Compound: acidic ribosomal protein p2
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2jdlA (A:)
mvsfrlsgatsssygvfisnlrkalpnerklydipllrsslpgsqryalihltnyadeti
svaidvtnvyimgyragdtsyffneasateaakyvfkdamrkvtlpysgnyerlqtaagk
ireniplglpaldsaittlfyynansaasalmvliqstseaarykfieqqigkrvdktfl
pslaiislenswsalskqiqiastnngqfespvvlinaqnqrvtitnvdagvvtsniall
lnrnnma

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2jdlB (B:)
mvsfrlsgatsssygvfisnlrkalpnerklydipllrsslpgsqryalihltnyadeti
svaidvtnvyimgyragdtsyffneasateaakyvfkdamrkvtlpysgnyerlqtaagk
ireniplglpaldsaittlfyynansaasalmvliqstseaarykfieqqigkrvdktfl
pslaiislenswsalskqiqiastnngqfespvvlinaqnqrvtitnvdagvvtsniall
lnrnnma

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.