PDB entry 2jdi

View 2jdi on RCSB PDB site
Description: ground state structure of f1-ATPase from bovine heart mitochondria (bovine f1-ATPase crystallised in the absence of azide)
Class: hydrolase
Keywords: ATP phosphorylase, hydrolase, ATP synthesis
Deposited on 2007-01-09, released 2007-03-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.177
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP synthase subunit alpha heart isoform
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483 (Start-509)
      • see remark 999 (480)
    Domains in SCOPe 2.08: d2jdia1, d2jdia2, d2jdia3
  • Chain 'B':
    Compound: ATP synthase subunit alpha heart isoform
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483 (Start-509)
      • see remark 999 (480)
    Domains in SCOPe 2.08: d2jdib1, d2jdib2, d2jdib3
  • Chain 'C':
    Compound: ATP synthase subunit alpha heart isoform
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483 (Start-509)
      • see remark 999 (480)
    Domains in SCOPe 2.08: d2jdic1, d2jdic2, d2jdic3
  • Chain 'D':
    Compound: ATP synthase subunit beta
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2jdid1, d2jdid2, d2jdid3
  • Chain 'E':
    Compound: ATP synthase subunit beta
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2jdie1, d2jdie2, d2jdie3
  • Chain 'F':
    Compound: ATP synthase subunit beta
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2jdif1, d2jdif2, d2jdif3
  • Chain 'G':
    Compound: ATP synthase gamma chain
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2jdig_
  • Chain 'H':
    Compound: ATP synthase delta chain
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2jdih1, d2jdih2
  • Chain 'I':
    Compound: ATP synthase epsilon chain
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2jdii_
  • Heterogens: ANP, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2jdiA (A:)
qktgtaevssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglk
gmslnlepdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgp
igskarrrvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiai
dtiinqkrfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaa
plqylapysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfy
lhsrlleraakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykg
irpainvglsvsrvgsaaqtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsr
gvrltellkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqall
gkirtdgkiseesdaklkeivtnflagfea

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdiA (A:)
dleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnlepdnvgvvvfgndklik
egdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarrrvglkapgiiprisvr
epmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqkrfndgtdekkklyciy
vaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylapysgcsmgeyfrdngkh
aliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlleraakmndafgggslta
lpvietqagdvsayiptnvisitdgqifletelfykgirpainvglsvsrvgsaaqtram
kqvagtmklelaqyrevaafaqfgsdldaatqqllsrgvrltellkqgqyspmaieeqva
viyagvrgyldklepskitkfenaflshvisqhqallgkirtdgkiseesdaklkeivtn
flagfea

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2jdiB (B:)
qktgtaevssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglk
gmslnlepdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgp
igskarrrvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiai
dtiinqkrfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaa
plqylapysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfy
lhsrlleraakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykg
irpainvglsvsrvgsaaqtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsr
gvrltellkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqall
gkirtdgkiseesdaklkeivtnflagfea

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdiB (B:)
vdleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnlepdnvgvvvfgndkli
kegdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarrrvglkapgiiprisv
repmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqkrfndgtdekkklyci
yvaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylapysgcsmgeyfrdngk
haliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlleraakmndafgggslt
alpvietqagdvsayiptnvisitdgqifletelfykgirpainvglsvsrvgsaaqtra
mkqvagtmklelaqyrevaldaatqqllsrgvrltellkqgqyspmaieeqvaviyagvr
gyldklepskitkfenaflshvisqhqallgkirtdgkiseesdaklkeivtnflagfea

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2jdiC (C:)
qktgtaevssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglk
gmslnlepdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgp
igskarrrvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiai
dtiinqkrfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaa
plqylapysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfy
lhsrlleraakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykg
irpainvglsvsrvgsaaqtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsr
gvrltellkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqall
gkirtdgkiseesdaklkeivtnflagfea

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdiC (C:)
dleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnlepdnvgvvvfgndklik
egdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarrrvglkapgiiprisvr
epmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqkrfndgtdekkklyciy
vaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylapysgcsmgeyfrdngkh
aliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlleraakmndafgggslta
lpvietqagdvsayiptnvisitdgqifletelfykgirpainvglsvsrvgsaaqtram
kqvagtmklelaqyrevaafaqfgsdldaatqqllsrgvrltellkqgqyspmaieeqva
viyagvrgyldklepskitkfenaflshvisqhqallgkirtdgkiseesdaklkeivtn
flagfea

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2jdiD (D:)
aaqaspspkagattgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlges
tvrtiamdgteglvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaai
haeapefvemsveqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvaka
hggysvfagvgertregndlyhemiesgvinlkdatskvalvygqmneppgararvaltg
ltvaeyfrdqegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeri
tttkkgsitsvqaiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsr
imdpnivgsehydvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsq
pfqvaevftghlgklvplketikgfqqilageydhlpeqafymvgpieeavakadklaee
hs

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdiD (D:)
ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
gklvplketikgfqqilageydhlpeqafymvgpieeavakadklae

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2jdiE (E:)
aaqaspspkagattgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlges
tvrtiamdgteglvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaai
haeapefvemsveqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvaka
hggysvfagvgertregndlyhemiesgvinlkdatskvalvygqmneppgararvaltg
ltvaeyfrdqegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeri
tttkkgsitsvqaiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsr
imdpnivgsehydvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsq
pfqvaevftghlgklvplketikgfqqilageydhlpeqafymvgpieeavakadklaee
hs

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdiE (E:)
ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
dvargvqkilqdykslqdilseedkltvsrarkiqrflsqpfqvaevftghlgklvplke
tikgfqqilageydhlpeqafymvgpieeavakadkla

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2jdiF (F:)
aaqaspspkagattgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlges
tvrtiamdgteglvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaai
haeapefvemsveqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvaka
hggysvfagvgertregndlyhemiesgvinlkdatskvalvygqmneppgararvaltg
ltvaeyfrdqegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeri
tttkkgsitsvqaiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsr
imdpnivgsehydvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsq
pfqvaevftghlgklvplketikgfqqilageydhlpeqafymvgpieeavakadklaee
hs

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdiF (F:)
ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
gklvplketikgfqqilageydhlpeqafymvgpieeavakadkla

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2jdiG (G:)
atlkditrrlksikniqkitksmkmvaaakyaraerelkparvygvgslalyekadiktp
edkkkhliigvssdrglcgaihssvakqmkseaanlaaagkevkiigvgdkirsilhrth
sdqflvtfkevgrrpptfgdasvialellnsgyefdegsiifnrfrsvisykteekpifs
ldtissaesmsiyddidadvlrnyqeyslaniiyyslkesttseqsarmtamdnasknas
emidkltltfnrtrqavitkelieiisgaaald

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdiG (G:)
atlkditrrlksikniqkitksmkmvaaakyaraerelkparvygvgliigvssdrglcg
aihssvaiigvgdkirsiltfkevgrrpptfgdasvialelsiifnrfrsvisykteysl
aniiyyslkesttseqsarmtamdnasknasemidkltltfnrtrqavitkelieiisga
aald

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2jdiH (H:)
aeaaaaqapaagpgqmsftfasptqvffnsanvrqvdvptqtgafgilaahvptlqvlrp
glvvvhaedgttskyfvssgsvtvnadssvqllaeeavtldmldlgaakanlekaqsell
gaadeatraeiqirieanealvkale

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdiH (H:)
sftfasptqvffnqvdvptlrpglvvvfvssgsqllaeeavtldmldlgaakanlekaqs
ellgaadeatraeiqirieanealvkal

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >2jdiI (I:)
vaywrqaglsyirysqicakavrdalktefkanamktsgstikivkvkke

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdiI (I:)
vaywrqaglsyirysqicakavrda