PDB entry 2jdi

View 2jdi on RCSB PDB site
Description: ground state structure of f1-ATPase from bovine heart mitochondria (bovine f1-ATPase crystallised in the absence of azide)
Class: hydrolase
Keywords: ATP phosphorylase, hydrolase, ATP synthesis
Deposited on 2007-01-09, released 2007-03-13
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.177
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP synthase subunit alpha heart isoform
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483 (Start-509)
      • see remark 999 (480)
    Domains in SCOPe 2.06: d2jdia1, d2jdia2, d2jdia3
  • Chain 'B':
    Compound: ATP synthase subunit alpha heart isoform
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483 (Start-509)
      • see remark 999 (480)
    Domains in SCOPe 2.06: d2jdib1, d2jdib2, d2jdib3
  • Chain 'C':
    Compound: ATP synthase subunit alpha heart isoform
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483 (Start-509)
      • see remark 999 (480)
    Domains in SCOPe 2.06: d2jdic1, d2jdic2, d2jdic3
  • Chain 'D':
    Compound: ATP synthase subunit beta
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2jdid1, d2jdid2, d2jdid3
  • Chain 'E':
    Compound: ATP synthase subunit beta
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2jdie1, d2jdie2, d2jdie3
  • Chain 'F':
    Compound: ATP synthase subunit beta
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2jdif1, d2jdif2, d2jdif3
  • Chain 'G':
    Compound: ATP synthase gamma chain
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2jdig_
  • Chain 'H':
    Compound: ATP synthase delta chain
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2jdih1, d2jdih2
  • Chain 'I':
    Compound: ATP synthase epsilon chain
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2jdii_
  • Heterogens: ANP, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2jdiA (A:)
    qktgtaevssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglk
    gmslnlepdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgp
    igskarrrvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiai
    dtiinqkrfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaa
    plqylapysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfy
    lhsrlleraakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykg
    irpainvglsvsrvgsaaqtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsr
    gvrltellkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqall
    gkirtdgkiseesdaklkeivtnflagfea
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jdiA (A:)
    dleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnlepdnvgvvvfgndklik
    egdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarrrvglkapgiiprisvr
    epmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqkrfndgtdekkklyciy
    vaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylapysgcsmgeyfrdngkh
    aliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlleraakmndafgggslta
    lpvietqagdvsayiptnvisitdgqifletelfykgirpainvglsvsrvgsaaqtram
    kqvagtmklelaqyrevaafaqfgsdldaatqqllsrgvrltellkqgqyspmaieeqva
    viyagvrgyldklepskitkfenaflshvisqhqallgkirtdgkiseesdaklkeivtn
    flagfea
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2jdiB (B:)
    qktgtaevssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglk
    gmslnlepdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgp
    igskarrrvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiai
    dtiinqkrfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaa
    plqylapysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfy
    lhsrlleraakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykg
    irpainvglsvsrvgsaaqtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsr
    gvrltellkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqall
    gkirtdgkiseesdaklkeivtnflagfea
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jdiB (B:)
    vdleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnlepdnvgvvvfgndkli
    kegdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarrrvglkapgiiprisv
    repmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqkrfndgtdekkklyci
    yvaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylapysgcsmgeyfrdngk
    haliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlleraakmndafgggslt
    alpvietqagdvsayiptnvisitdgqifletelfykgirpainvglsvsrvgsaaqtra
    mkqvagtmklelaqyrevaldaatqqllsrgvrltellkqgqyspmaieeqvaviyagvr
    gyldklepskitkfenaflshvisqhqallgkirtdgkiseesdaklkeivtnflagfea
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2jdiC (C:)
    qktgtaevssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglk
    gmslnlepdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgp
    igskarrrvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiai
    dtiinqkrfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaa
    plqylapysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfy
    lhsrlleraakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykg
    irpainvglsvsrvgsaaqtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsr
    gvrltellkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqall
    gkirtdgkiseesdaklkeivtnflagfea
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jdiC (C:)
    dleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnlepdnvgvvvfgndklik
    egdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarrrvglkapgiiprisvr
    epmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqkrfndgtdekkklyciy
    vaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylapysgcsmgeyfrdngkh
    aliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlleraakmndafgggslta
    lpvietqagdvsayiptnvisitdgqifletelfykgirpainvglsvsrvgsaaqtram
    kqvagtmklelaqyrevaafaqfgsdldaatqqllsrgvrltellkqgqyspmaieeqva
    viyagvrgyldklepskitkfenaflshvisqhqallgkirtdgkiseesdaklkeivtn
    flagfea
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2jdiD (D:)
    aaqaspspkagattgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlges
    tvrtiamdgteglvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaai
    haeapefvemsveqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvaka
    hggysvfagvgertregndlyhemiesgvinlkdatskvalvygqmneppgararvaltg
    ltvaeyfrdqegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeri
    tttkkgsitsvqaiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsr
    imdpnivgsehydvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsq
    pfqvaevftghlgklvplketikgfqqilageydhlpeqafymvgpieeavakadklaee
    hs
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jdiD (D:)
    ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
    lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
    eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
    rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
    qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
    aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
    dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
    gklvplketikgfqqilageydhlpeqafymvgpieeavakadklae
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2jdiE (E:)
    aaqaspspkagattgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlges
    tvrtiamdgteglvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaai
    haeapefvemsveqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvaka
    hggysvfagvgertregndlyhemiesgvinlkdatskvalvygqmneppgararvaltg
    ltvaeyfrdqegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeri
    tttkkgsitsvqaiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsr
    imdpnivgsehydvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsq
    pfqvaevftghlgklvplketikgfqqilageydhlpeqafymvgpieeavakadklaee
    hs
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jdiE (E:)
    ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
    lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
    eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
    rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
    qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
    aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
    dvargvqkilqdykslqdilseedkltvsrarkiqrflsqpfqvaevftghlgklvplke
    tikgfqqilageydhlpeqafymvgpieeavakadkla
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2jdiF (F:)
    aaqaspspkagattgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlges
    tvrtiamdgteglvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaai
    haeapefvemsveqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvaka
    hggysvfagvgertregndlyhemiesgvinlkdatskvalvygqmneppgararvaltg
    ltvaeyfrdqegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeri
    tttkkgsitsvqaiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsr
    imdpnivgsehydvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsq
    pfqvaevftghlgklvplketikgfqqilageydhlpeqafymvgpieeavakadklaee
    hs
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jdiF (F:)
    ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
    lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
    eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
    rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
    qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
    aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
    dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
    gklvplketikgfqqilageydhlpeqafymvgpieeavakadkla
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2jdiG (G:)
    atlkditrrlksikniqkitksmkmvaaakyaraerelkparvygvgslalyekadiktp
    edkkkhliigvssdrglcgaihssvakqmkseaanlaaagkevkiigvgdkirsilhrth
    sdqflvtfkevgrrpptfgdasvialellnsgyefdegsiifnrfrsvisykteekpifs
    ldtissaesmsiyddidadvlrnyqeyslaniiyyslkesttseqsarmtamdnasknas
    emidkltltfnrtrqavitkelieiisgaaald
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jdiG (G:)
    atlkditrrlksikniqkitksmkmvaaakyaraerelkparvygvgliigvssdrglcg
    aihssvaiigvgdkirsiltfkevgrrpptfgdasvialelsiifnrfrsvisykteysl
    aniiyyslkesttseqsarmtamdnasknasemidkltltfnrtrqavitkelieiisga
    aald
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2jdiH (H:)
    aeaaaaqapaagpgqmsftfasptqvffnsanvrqvdvptqtgafgilaahvptlqvlrp
    glvvvhaedgttskyfvssgsvtvnadssvqllaeeavtldmldlgaakanlekaqsell
    gaadeatraeiqirieanealvkale
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jdiH (H:)
    sftfasptqvffnqvdvptlrpglvvvfvssgsqllaeeavtldmldlgaakanlekaqs
    ellgaadeatraeiqirieanealvkal
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >2jdiI (I:)
    vaywrqaglsyirysqicakavrdalktefkanamktsgstikivkvkke
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jdiI (I:)
    vaywrqaglsyirysqicakavrda