PDB entry 2jcc
View 2jcc on RCSB PDB site
Description: ah3 recognition of mutant hla-a2 w167a
Class: immune system
Keywords: glycoprotein, immune system, transmembrane, immunoglobulin domain, host-virus interaction, MHC I, membrane, receptor, polymorphism, pyrrolidone carboxylic acid, imunoregulatory complex, class I MHC-tcr co-crystal, ubl conjugation, immune response, hypothetical protein
Deposited on
2006-12-21, released
2007-10-09
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.244
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P01892 (0-274)
- engineered mutation (166)
Domains in SCOPe 2.02: d2jcca1, d2jcca2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2JCC (1-End)
- Uniprot P61769 (1-99)
Domains in SCOPe 2.02: d2jccb_ - Chain 'C':
Compound: p1049
Species: HOMO SAPIENS, synthetic [TaxId:9606]
- Chain 'E':
Compound: tcr alpha
Species: MUS MUSCULUS [TaxId:10090]
Domains in SCOPe 2.02: d2jcce1, d2jcce2 - Chain 'F':
Compound: tcr beta
Species: MUS MUSCULUS [TaxId:10090]
Domains in SCOPe 2.02: d2jccf1, d2jccf2 - Chain 'H':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P01892 (0-274)
- engineered mutation (166)
Domains in SCOPe 2.02: d2jcch1, d2jcch2 - Chain 'I':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2JCC (1-End)
- Uniprot P61769 (1-99)
Domains in SCOPe 2.02: d2jcci_ - Chain 'J':
Compound: p1049
Species: HOMO SAPIENS, synthetic [TaxId:9606]
- Chain 'L':
Compound: tcr alpha
Species: MUS MUSCULUS [TaxId:10090]
Domains in SCOPe 2.02: d2jccl1, d2jccl2 - Chain 'M':
Compound: tcr beta
Species: MUS MUSCULUS [TaxId:10090]
Domains in SCOPe 2.02: d2jccm1, d2jccm2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>2jccA (A:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvealrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwe
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>2jccB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>2jccE (E:)
mdsvtqteglvtlteglpvmlnctyqstyspflfwyvqhlneapklllksftdnkrpehq
gfhatlhkssssfhlqkssaqlsdsalyycalflasssfsklvfgqgtslsvvpniqnpe
pavyqlkdprsqdstlclftdfdsqinvpktmesgtfitdktvldmkamdsksngaiaws
nqtsftcqdifket
- Chain 'F':
Sequence, based on SEQRES records: (download)
>2jccF (F:)
meaavtqsprskvavtggkvtlschqtnnhdymywyrqdtghglrlihysyvadstekgd
ipdgykasrpsqenfslilelaslsqtavyfcassdwvsyeqyfgpgtrltvledlrnvt
ppkvslfepskaeiankqkatlvclargffpdhvelswwvngkevhsgvstdpqaykesn
ysyalssrlrvsatfwhnprnhfrcqvqfhglseedkwpegspkpvtqnisaeawgra
Sequence, based on observed residues (ATOM records): (download)
>2jccF (F:)
eaavtqsprskvavtggkvtlschqtnnhdymywyrqdtghglrlihysyvadstekgdi
pdgykasrpsqenfslilelaslsqtavyfcassdwvsyeqyfgpgtrltvledlrnvtp
pkvslfepskaeiankqkatlvclargffpdhvelswwvngkevhsgvstdpqaykesny
syalssrlrvsatfwhnprnhfrcqvqfhglseedkwpegspkpvtqnisaeawgra
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>2jccH (H:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvealrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwe
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>2jccI (I:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'J':
No sequence available.
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>2jccL (L:)
mdsvtqteglvtlteglpvmlnctyqstyspflfwyvqhlneapklllksftdnkrpehq
gfhatlhkssssfhlqkssaqlsdsalyycalflasssfsklvfgqgtslsvvpniqnpe
pavyqlkdprsqdstlclftdfdsqinvpktmesgtfitdktvldmkamdsksngaiaws
nqtsftcqdifket
- Chain 'M':
Sequence, based on SEQRES records: (download)
>2jccM (M:)
meaavtqsprskvavtggkvtlschqtnnhdymywyrqdtghglrlihysyvadstekgd
ipdgykasrpsqenfslilelaslsqtavyfcassdwvsyeqyfgpgtrltvledlrnvt
ppkvslfepskaeiankqkatlvclargffpdhvelswwvngkevhsgvstdpqaykesn
ysyalssrlrvsatfwhnprnhfrcqvqfhglseedkwpegspkpvtqnisaeawgra
Sequence, based on observed residues (ATOM records): (download)
>2jccM (M:)
eaavtqsprskvavtggkvtlschqtnnhdymywyrqdtghglrlihysyvadstekgdi
pdgykasrpsqenfslilelaslsqtavyfcassdwvsyeqyfgpgtrltvledlrnvtp
pkvslfepskaeiankqkatlvclargffpdhvelswwvngkevhsgvstdpqaykesny
syalssrlrvsatfwhnprnhfrcqvqfhglseedkwpegspkpvtqnisaeawgra