PDB entry 2jaw

View 2jaw on RCSB PDB site
Description: crystal structure of d41n variant of human mitochondrial 5' (3')-deoxyribonucleotidase (mdn) in complex with 5-bromovinyldeoxyuridine 5'-monophosphate
Class: hydrolase
Keywords: transit peptide, nucleotide-binding, mitochondrial, metal- binding, alfa beta fold, nucleotide- binding, nucleotide metabolism, hydrolase, magnesium, mitochondrion, metal-binding
Deposited on 2006-11-30, released 2007-11-20
The last revision prior to the SCOP 1.75 freeze date was dated 2008-04-29, with a file datestamp of 2008-04-25.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.18693
AEROSPACI score: 0.58 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5'(3')-deoxyribonucleotidase
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NPB1 (Start-196)
      • engineered mutation (9)
    Domains in SCOP 1.75: d2jawa1
  • Heterogens: MG, BVP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2jawA (A:)
ggralrvlvnmdgvladfeggflrkfrarfpdqpfialedrrgfwvseqygrlrpglsek
aisiwesknfffeleplpgaveavkemaslqntdvfictspikmfkycpyekyawvekyf
gpdfleqivltrdktvvsadlliddrpditgaeptpswehvlftachnqhlqlqpprrrl
hswaddwkaildskrpc

    Sequence, based on observed residues (ATOM records): (download) 
    >2jawA (A:)
ralrvlvnmdgvladfeggflrkfrarfpdqpfialedrrgfwvseqygrlrpglsekai
siwesknfffeleplpgaveavkemaslqntdvfictspikmfkycpyekyawvekyfgp
dfleqivltrdktvvsadlliddrpditgaeptpswehvlftachnqhlqlqpprrrlhs
waddwkaildskrpc