PDB entry 2jaw

View 2jaw on RCSB PDB site
Description: Crystal structure of D41N variant of human mitochondrial 5'(3')- deoxyribonucleotidase (mdN) in complex with 5-bromovinyldeoxyuridine 5'-monophosphate
Class: hydrolase
Keywords: transit peptide, nucleotide-binding, mitochondrial, metal-binding, alfa beta fold, nucleotide- binding, nucleotide metabolism, hydrolase, magnesium, mitochondrion
Deposited on 2006-11-30, released 2007-11-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5'(3')-deoxyribonucleotidase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NPB1 (Start-196)
      • engineered mutation (9)
    Domains in SCOPe 2.08: d2jawa_
  • Heterogens: BVP, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2jawA (A:)
    ggralrvlvnmdgvladfeggflrkfrarfpdqpfialedrrgfwvseqygrlrpglsek
    aisiwesknfffeleplpgaveavkemaslqntdvfictspikmfkycpyekyawvekyf
    gpdfleqivltrdktvvsadlliddrpditgaeptpswehvlftachnqhlqlqpprrrl
    hswaddwkaildskrpc
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jawA (A:)
    ralrvlvnmdgvladfeggflrkfrarfpdqpfialedrrgfwvseqygrlrpglsekai
    siwesknfffeleplpgaveavkemaslqntdvfictspikmfkycpyekyawvekyfgp
    dfleqivltrdktvvsadlliddrpditgaeptpswehvlftachnqhlqlqpprrrlhs
    waddwkaildskrpc