PDB entry 2j9p

View 2j9p on RCSB PDB site
Description: crystal structure of the bacillus subtilis pbp4a, and its complex with a peptidoglycan mimetic peptide.
Class: hydrolase
Keywords: d-ala-d-ala- carboxypeptidase, peptidoglycan synthesis, penicillin-binding protein, peptidoglycan, cell division, bacillus subtilis, cell wall, hydrolase, cell shape, cell cycle
Deposited on 2006-11-15, released 2007-07-03
The last revision prior to the SCOP 1.75 freeze date was dated 2007-08-14, with a file datestamp of 2007-08-10.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.208
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: penicillin-binding protein
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2j9pa1
  • Chain 'B':
    Compound: penicillin-binding protein
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2j9pb1
  • Heterogens: REZ

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2j9pA (A:)
    aekqdalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaa
    aalsvlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkv
    ikgnligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqke
    geepavsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewi
    svwepagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsn
    nghaevlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdq
    lsqllydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvss
    lsgyaetksgkklvfsillnglideedgkdiedqiavilanq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2j9pA (A:)
    dalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaaaals
    vlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkvikgn
    ligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqkegeep
    avsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewisvwe
    pagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsnngha
    evlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdqlsql
    lydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvsslsgy
    aetksgkklvfsillnglideedgkdiedqiavilanq
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2j9pB (B:)
    aekqdalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaa
    aalsvlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkv
    ikgnligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqke
    geepavsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewi
    svwepagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsn
    nghaevlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdq
    lsqllydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvss
    lsgyaetksgkklvfsillnglideedgkdiedqiavilanq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2j9pB (B:)
    dalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaaaals
    vlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkvikgn
    ligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqkegeep
    avsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewisvwe
    pagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsnngha
    evlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdqlsql
    lydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvsslsgy
    aetksgkklvfsillnglideedgkdiedqiavilanq