PDB entry 2j9p

View 2j9p on RCSB PDB site
Description: Crystal structure of the Bacillus subtilis PBP4a, and its complex with a peptidoglycan mimetic peptide.
Class: hydrolase
Keywords: d-ala-d-ala- carboxypeptidase, peptidoglycan synthesis, penicillin-binding protein, peptidoglycan, cell division, bacillus subtilis, cell wall, hydrolase, cell shape, cell cycle
Deposited on 2006-11-15, released 2007-07-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-12-12, with a file datestamp of 2018-12-07.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-alanyl-D-alanine carboxypeptidase dacC
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: dacC, pbp, BSU18350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j9pa1
  • Chain 'B':
    Compound: D-alanyl-D-alanine carboxypeptidase dacC
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: dacC, pbp, BSU18350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j9pb1
  • Heterogens: REZ, DAL

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j9pA (A:)
aekqdalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaa
aalsvlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkv
ikgnligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqke
geepavsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewi
svwepagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsn
nghaevlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdq
lsqllydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvss
lsgyaetksgkklvfsillnglideedgkdiedqiavilanq

    Sequence, based on observed residues (ATOM records): (download) 
    >2j9pA (A:)
dalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaaaals
vlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkvikgn
ligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqkegeep
avsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewisvwe
pagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsnngha
evlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdqlsql
lydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvsslsgy
aetksgkklvfsillnglideedgkdiedqiavilanq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2j9pB (B:)
aekqdalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaa
aalsvlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkv
ikgnligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqke
geepavsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewi
svwepagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsn
nghaevlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdq
lsqllydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvss
lsgyaetksgkklvfsillnglideedgkdiedqiavilanq

    Sequence, based on observed residues (ATOM records): (download) 
    >2j9pB (B:)
dalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaaaals
vlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkvikgn
ligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqkegeep
avsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewisvwe
pagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsnngha
evlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdqlsql
lydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvsslsgy
aetksgkklvfsillnglideedgkdiedqiavilanq