PDB entry 2j8x
View 2j8x on RCSB PDB site
Description: epstein-barr virus uracil-DNA glycosylase in complex with ugi from pbs-2
Class: hydrolase/inhibitor
Keywords: hydrolase-inhibitor complex, ebv, DNA repair, lytic protein, epstein-barr virus, uracil- DNA glycosylase, hydrolase, uracil-DNA glycosylase inhibitor
Deposited on
2006-10-31, released
2006-12-13
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-31.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.196
AEROSPACI score: 0.36
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: uracil-DNA glycosylase
Species: EPSTEIN-BARR VIRUS [TaxId:10376]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2j8xa1 - Chain 'B':
Compound: uracil-DNA glycosylase inhibitor
Species: BACILLUS PHAGE PBS2 [TaxId:10684]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2j8xb_ - Chain 'C':
Compound: uracil-DNA glycosylase
Species: EPSTEIN-BARR VIRUS [TaxId:10376]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2j8xc_ - Chain 'D':
Compound: uracil-DNA glycosylase inhibitor
Species: BACILLUS PHAGE PBS2 [TaxId:10684]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2j8xd_ - Heterogens: URE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2j8xA (A:)
genlllpdlwldflqlspifqrklaaviacvrrlrtqatvypeedmcmawarfcdpsdik
vvilgqdpyhggqanglafsvaygfpvppslrniyaelhrslpefsppdhgcldawasqg
vlllntiltvqkgkpgshadigwawftdhvisllserlkacvfmlwgakagdkaslinsk
khlvltsqhpsplaqnstrksaqqkflgnnhfvlannflrekglgeidwrl
Sequence, based on observed residues (ATOM records): (download)
>2j8xA (A:)
enlllpdlwldflqlspifqrklaaviacvrrlrtqatvypeedmcmawarfcdpsdikv
vilgqdpyhggqanglafsvaygfpvppslrniyaelhrslpefsppdhgcldawasqgv
lllntiltvqkgkpgshadigwawftdhvisllserlkacvfmlwgakagdkaslinskk
hlvltsqhpsplaqnstrksaqqkflgnnhfvlannflrekglgeidwrl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2j8xB (B:)
mtnlsdiieketgkqlviqesilmlpeeveevignkpesdilvhtaydestdenvmllts
dapeykpwalviqdsngenkikml
Sequence, based on observed residues (ATOM records): (download)
>2j8xB (B:)
tnlsdiieketgkqlviqesilmlpeeveevignkpesdilvhtaydestdenvmlltsd
apeykpwalviqdsngenkikml
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2j8xC (C:)
genlllpdlwldflqlspifqrklaaviacvrrlrtqatvypeedmcmawarfcdpsdik
vvilgqdpyhggqanglafsvaygfpvppslrniyaelhrslpefsppdhgcldawasqg
vlllntiltvqkgkpgshadigwawftdhvisllserlkacvfmlwgakagdkaslinsk
khlvltsqhpsplaqnstrksaqqkflgnnhfvlannflrekglgeidwrl
Sequence, based on observed residues (ATOM records): (download)
>2j8xC (C:)
nlllpdlwldflqlspifqrklaaviacvrrlrtqatvypeedmcmawarfcdpsdikvv
ilgqdpyhggqanglafsvaygfpvppslrniyaelhrslpefsppdhgcldawasqgvl
llntiltvqkgkpgshadigwawftdhvisllserlkacvfmlwgakagdkaslinskkh
lvltsqhpsplaqnstrksaqqkflgnnhfvlannflrekglgeidwrl
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2j8xD (D:)
mtnlsdiieketgkqlviqesilmlpeeveevignkpesdilvhtaydestdenvmllts
dapeykpwalviqdsngenkikml
Sequence, based on observed residues (ATOM records): (download)
>2j8xD (D:)
lsdiieketgkqlviqesilmlpeeveevignkpesdilvhtaydestdenvmlltsdap
eykpwalviqdsngenkikml