PDB entry 2j5l
View 2j5l on RCSB PDB site
Description: structure of a plasmodium falciparum apical membrane antigen 1-fab f8.12.19 complex
Class: immune system
Keywords: malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain, membrane, merozoite, transmembrane, immune system, immunoglobulin c region, antibody cross-reactivity
Deposited on
2006-09-18, released
2007-01-30
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.215
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: apical membrane antigen 1
Species: PLASMODIUM FALCIPARUM [TaxId:5833]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9GVB7
- engineered mutation (466)
Domains in SCOPe 2.04: d2j5la1 - Chain 'B':
Compound: fab fragment of monoclonal antibody f8.12.19
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2j5lb1, d2j5lb2 - Chain 'C':
Compound: fab fragment of monoclonal antibody f8.12.19
Species: Mus musculus [TaxId:10090]
Domains in SCOPe 2.04: d2j5lc1, d2j5lc2
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2j5lA (A:)
qksdvyhpinehrehpkeyeyplhqehtyqqedsgedentlqhaypidhegaepapqeqn
lfssieiversnymgnpwteymakydieevhgsgirvdlgedaevagtqyrlpsgkcpvf
gkgiiiensnttflkpvatgnqdlkdggfafpptnplispmtlngmrdfyknneyvknld
eltlcsrhagnmnpdndknsnykypavydyndkkchilyiaaqenngprycnkdqskrns
mfcfrpakdklfenytylsknvvdnweevcprknlenakfglwvdgncediphvnefsan
dlfecnklvfelsasdqpkqyeqhltdyekikegfknknasmiksaflptgafkadryks
hgkgynwgnynretqkceifnvkptclinnssyiattalshpievehnfpcslykdeikk
eiereskriklndnddegnkkiiaprifisddkdslkcpcdpemvsqstcrffvckcver
raevtsnnevvvkeeykdeyadipehkptydnmkiiiassaavavlatilmvylykrkgn
aekydkmdqpqhygkstsrndemldpeasfwgeekrashtt
Sequence, based on observed residues (ATOM records): (download)
>2j5lA (A:)
ifisddkdslkcpcdpemvsqstcrffvckcver
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>2j5lB (B:)
esvlsqspailsaspgekvtmtcrarssvsymhwyqqksgsspkpwihatsnlasgvpar
fsgsgsgtsysltisrveaedaatyycqqwsshpptfgsgtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>2j5lC (C:)
evqlvesggglvkpggslklscaasgfifsdyymywvrqtpekrlewvatisdgnsytyy
vdsvkgrftisrdnaknnlylqmsslksedtaiyycardgptdssgyggfgywgqgtlvt
vseakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavl
qsdlytlsssvtvpssprpsetvtcnvahpasstkvdkkivprdc