PDB entry 2j5k

View 2j5k on RCSB PDB site
Description: 2.0 a resolution structure of the wild type malate dehydrogenase from haloarcula marismortui (radiation damage series)
Class: oxidoreductase
Keywords: nad, halophile, oxidoreductase, radiation damage, malate dehydrogenase, tricarboxylic acid cycle
Deposited on 2006-09-18, released 2006-09-21
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.2252
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: malate dehydrogenase
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2j5ka1, d2j5ka2
  • Chain 'B':
    Compound: malate dehydrogenase
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2j5kb1, d2j5kb2
  • Chain 'C':
    Compound: malate dehydrogenase
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2j5kc1, d2j5kc2
  • Chain 'D':
    Compound: malate dehydrogenase
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2j5kd1, d2j5kd2
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j5kA (A:)
mtkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntr
vrqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyisltts
npvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaq
vpvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhd
tgevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqy
dkis

    Sequence, based on observed residues (ATOM records): (download) 
    >2j5kA (A:)
tkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntrv
rqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyislttsn
pvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaqv
pvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhdt
gevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqyd
kis

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2j5kB (B:)
mtkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntr
vrqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyisltts
npvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaq
vpvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhd
tgevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqy
dkis

    Sequence, based on observed residues (ATOM records): (download) 
    >2j5kB (B:)
tkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntrv
rqggyedtagsdvvvitagiqtridlagdnapimediqssldehnddyislttsnpvdll
nrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaqvpvfsk
vrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhdtgevlp
asvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqydkis

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2j5kC (C:)
mtkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntr
vrqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyisltts
npvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaq
vpvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhd
tgevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqy
dkis

    Sequence, based on observed residues (ATOM records): (download) 
    >2j5kC (C:)
tkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntrv
rqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyislttsn
pvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaqv
pvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhdt
gevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqyd
kis

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2j5kD (D:)
mtkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntr
vrqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyisltts
npvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaq
vpvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhd
tgevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqy
dkis

    Sequence, based on observed residues (ATOM records): (download) 
    >2j5kD (D:)
tkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntrv
rqggyedtagsdvvvitagiqtridlagdnapimediqssldehnddyislttsnpvdll
nrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaqvpvfsk
vrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhdtgevlp
asvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqydkis