PDB entry 2j56

View 2j56 on RCSB PDB site
Description: x-ray reduced paraccocus denitrificans methylamine dehydrogenase n-semiquinone in complex with amicyanin.
Class: oxidoreductase
Keywords: copper, transport, periplasmic, metal-binding, oxidoreductase, electron transport, methylamine dehydrogenase single crystal microspectrophoto
Deposited on 2006-09-12, released 2007-01-23
The last revision prior to the SCOP 1.73 freeze date was dated 2007-01-23, with a file datestamp of 2007-07-20.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.171
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: amicyanin
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2j56a1
  • Chain 'B':
    Compound: amicyanin
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2j56b1
  • Chain 'H':
    Compound: Methylamine dehydrogenase heavy chain
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed):
    • Uniprot P29894 (Start-385)
      • conflict see remark 9 (311-312)
    Domains in SCOP 1.73: d2j56h1
  • Chain 'J':
    Compound: Methylamine dehydrogenase heavy chain
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed):
    • Uniprot P29894 (Start-385)
      • conflict see remark 9 (311-312)
    Domains in SCOP 1.73: d2j56j1
  • Chain 'L':
    Compound: Methylamine dehydrogenase light chain
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Methylamine dehydrogenase light chain
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CU, NA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2j56A (A:)
dkatipsespfaaaevadgaivvdiakmkyetpelhvkvgdtvtwinreamphnvhfvag
vlgeaalkgpmmkkeqaysltfteagtydyhctphpfmrgkvvve

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2j56B (B:)
dkatipsespfaaaevadgaivvdiakmkyetpelhvkvgdtvtwinreamphnvhfvag
vlgeaalkgpmmkkeqaysltfteagtydyhctphpfmrgkvvve

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2j56H (H:)
qdapeaetqaqetqgqaaaraaaadlaagqddeprileapapdarrvyvndpahfaavtq
qfvidgeagrvigmidggflpnpvvaddgsfiahastvfsriargertdyvevfdpvtll
ptadielpdaprflvgtypwmtsltpdgktllfyqfspapavgvvdlegkafkrmldvpd
cyhifptapdtffmhcrdgslakvafgtegtpeithtevfhpedeflinhpaysqkagrl
vwptytgkihqidlssgdakflpavealteaeradgwrpggwqqvayhraldriyllvdq
rdewrhktasrfvvvldaktgerlakfemgheidsinvsqdekpllyalstgdktlyihd
aesgeelrsvnqlghgpqvittadmg

    Sequence, based on observed residues (ATOM records): (download) 
    >2j56H (H:)
etqgqaaaraaaadlaagqddeprileapapdarrvyvndpahfaavtqqfvidgeagrv
igmidggflpnpvvaddgsfiahastvfsriargertdyvevfdpvtllptadielpdap
rflvgtypwmtsltpdgktllfyqfspapavgvvdlegkafkrmldvpdcyhifptapdt
ffmhcrdgslakvafgtegtpeithtevfhpedeflinhpaysqkagrlvwptytgkihq
idlssgdakflpavealteaeradgwrpggwqqvayhraldriyllvdqrdewrhktasr
fvvvldaktgerlakfemgheidsinvsqdekpllyalstgdktlyihdaesgeelrsvn
qlghgpqvittadmg

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >2j56J (J:)
qdapeaetqaqetqgqaaaraaaadlaagqddeprileapapdarrvyvndpahfaavtq
qfvidgeagrvigmidggflpnpvvaddgsfiahastvfsriargertdyvevfdpvtll
ptadielpdaprflvgtypwmtsltpdgktllfyqfspapavgvvdlegkafkrmldvpd
cyhifptapdtffmhcrdgslakvafgtegtpeithtevfhpedeflinhpaysqkagrl
vwptytgkihqidlssgdakflpavealteaeradgwrpggwqqvayhraldriyllvdq
rdewrhktasrfvvvldaktgerlakfemgheidsinvsqdekpllyalstgdktlyihd
aesgeelrsvnqlghgpqvittadmg

    Sequence, based on observed residues (ATOM records): (download) 
    >2j56J (J:)
etqgqaaaraaaadlaagqddeprileapapdarrvyvndpahfaavtqqfvidgeagrv
igmidggflpnpvvaddgsfiahastvfsriargertdyvevfdpvtllptadielpdap
rflvgtypwmtsltpdgktllfyqfspapavgvvdlegkafkrmldvpdcyhifptapdt
ffmhcrdgslakvafgtegtpeithtevfhpedeflinhpaysqkagrlvwptytgkihq
idlssgdakflpavealteaeradgwrpggwqqvayhraldriyllvdqrdewrhktasr
fvvvldaktgerlakfemgheidsinvsqdekpllyalstgdktlyihdaesgeelrsvn
qlghgpqvittadmg

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.