PDB entry 2j0s
View 2j0s on RCSB PDB site
Description: the crystal structure of the exon junction complex at 2.2 a resolution
Class: hydrolase/RNA
Keywords: mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport, nuclear protein, alternative splicing, nonsense-mediated mRNA decay, dead-box helicase, nucleotide-binding, ATP-binding, DNA-binding, RNA-binding, coiled coil, ejc, helicase, hydrolase, transport, acetylation
Deposited on
2006-08-04, released
2006-09-06
The last revision prior to the SCOP 1.73 freeze date was dated
2006-09-06, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: 0.18664
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ATP-dependent RNA helicase ddx48
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2j0sa1, d2j0sa2 - Chain 'C':
Compound: Protein mago nashi homolog
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2j0sc1 - Chain 'D':
Compound: RNA-binding protein 8A
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2j0sd1 - Chain 'E':
Compound: 5'-r(*up*up*up*up*up*up*up*up*up*up *up*up*up*up*u)-3'
- Chain 'T':
Compound: Protein CASC3
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
- Heterogens: MG, ANP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2j0sA (A:)
attatmatsgsarkrllkeedmtkvefetseevdvtptfdtmglredllrgiyaygfekp
saiqqraikqiikgrdviaqsqsgtgktatfsisvlqcldiqvretqalilaptrelavq
iqkgllalgdymnvqchaciggtnvgedirkldygqhvvagtpgrvfdmirrrslrtrai
kmlvldeademlnkgfkeqiydvyrylppatqvvlisatlpheilemtnkfmtdpirilv
krdeltlegikqffvavereewkfdtlcdlydtltitqavifcntkrkvdwltekmrean
ftvssmhgdmpqkeresimkefrsgasrvlistdvwargldvpqvsliinydlpnnrely
ihrigrsgrygrkgvainfvknddirilrdieqyystqidempmnvadli
Sequence, based on observed residues (ATOM records): (download)
>2j0sA (A:)
edmtkvefetseevdvtptfdtmglredllrgiyaygfekpsaiqqraikqiikgrdvia
qsqsgtgktatfsisvlqcldiqvretqalilaptrelavqiqkgllalgdymnvqchac
iggtnvgedirkldygqhvvagtpgrvfdmirrrslrtraikmlvldeademlnkgfkeq
iydvyrylppatqvvlisatlpheilemtnkfmtdpirilvkrdeltlegikqffvaver
eewkfdtlcdlydtltitqavifcntkrkvdwltekmreanftvssmhgdmpqkeresim
kefrsgasrvlistdvwargldvpqvsliinydlpnnrelyihrigrsgrygrkgvainf
vknddirilrdieqyystqidempmnvadli
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2j0sC (C:)
mesdfylryyvghkgkfgheflefefrpdgklryannsnykndvmirkeayvhksvmeel
kriiddseitkeddalwpppdrvgrqeleivigdehisfttskigslidvnqskdpeglr
vfyylvqdlkclvfsliglhfkikpi
Sequence, based on observed residues (ATOM records): (download)
>2j0sC (C:)
dfylryyvghkgkfgheflefefrpdgklryannsnykndvmirkeayvhksvmeelkri
iddseitkeddalwpppdrvgrqeleivigdehisfttskigslidvnqskdpeglrvfy
ylvqdlkclvfsliglhfkikpi
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>2j0sD (D:)
pqrsvegwilfvtgvheeateedihdkfaeygeiknihlnldrrtgylkgytlveyetyk
eaqaameglngqdlmgqpisvdwcfvrgp
- Chain 'E':
No sequence available.
- Chain 'T':
No sequence available.