PDB entry 2j07
View 2j07 on RCSB PDB site
Description: thermus DNA photolyase with 8-hdf antenna chromophore
Class: lyase
Keywords: chromophore, DNA binding protein, flavoprotein, nucleotide-binding, antenna chromophore, photoreactivating enzyme, cyclobutane pyrimidine dimer (cpd), fad, 8-hdf, lyase, plasmid, DNA damage, DNA repair
Deposited on
2006-08-01, released
2007-05-01
The last revision prior to the SCOP 1.73 freeze date was dated
2007-05-01, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.171
AEROSPACI score: 0.46
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: deoxyribodipyrimidine photo-lyase
Species: Thermus thermophilus
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2j07a1, d2j07a2 - Heterogens: CL, PO4, FAD, HDF, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2j07A (A:)
mgpllvwhrgdlrlhdhpallealargpvvglvvldpnnlkttprrrawflenvralrea
yrarggalwvleglpwekvpeaarrlkakavyaltshtpygryrdgrvrealpvplhllp
aphllppdlprayrvytpfsrlyrgaapplpppealpkgpeegeipredpglplpepgee
aalaglrafleaklpryaeerdrldgeggsrlspyfalgvlsprlaaweaerrggegark
wvaellwrdfsyhllyhfpwmaerpldprfqafpwqedealfqawyegktgvplvdaamr
elhatgflsnrarmnaaqfavkhlllpwkrceeafrhllldgdravnlqgwqwagglgvd
aapyfrvfnpvlqgerhdpegrwlkrwapeypsyapkdpvvdleearrrylrlardlarg
Sequence, based on observed residues (ATOM records): (download)
>2j07A (A:)
gpllvwhrgdlrlhdhpallealargpvvglvvldpnnlkttprrrawflenvralreay
rarggalwvleglpwekvpeaarrlkakavyaltshtpygryrdgrvrealpvplhllpa
phllppdlprayrvytpfsrlyrgaapplpppealpkgpeegeipredpglplpepgeea
alaglrafleaklpryaeerdrldgeggsrlspyfalgvlsprlaaweaerrggegarkw
vaellwrdfsyhllyhfpwmaerpldprfqafpwqedealfqawyegktgvplvdaamre
lhatgflsnrarmnaaqfavkhlllpwkrceeafrhllldgdravnlqgwqwagglgvda
apyfrvfnpvlqgerhdpegrwlkrwapeypsyapkdpvvdleearrrylrlardlarg