PDB entry 2itl

View 2itl on RCSB PDB site
Description: The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp)
Class: DNA binding protein/DNA
Keywords: DNA binding protein, DNA binding protein/DNA COMPLEX
Deposited on 2006-10-19, released 2006-12-12
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-19.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: 0.204
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Gene: large T antigen
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2itla_
  • Chain 'B':
    Compound: large t antigen
    Species: Simian virus 40 [TaxId:10633]
    Gene: large T antigen
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2itlb_
  • Chain 'C':
    Compound: 24-nt PEN element of the SV40 DNA origin
  • Chain 'W':
    Compound: 24-nt PEN element of the SV40 DNA origin
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2itlA (A:)
gshmkvedpkdfpsellsflshavfsnrtlacfaiyttkekaallykkimekysvtfisr
hnsynhnilffltphrhrvsainnyaqklctfsflickgvnkeylmysaltrdpfsviee
slpgglkehdfnp

    Sequence, based on observed residues (ATOM records): (download) 
    >2itlA (A:)
dpkdfpsellsflshavfsnrtlacfaiyttkekaallykkimekysvtfisrhnsynhn
ilffltphrhrvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2itlB (B:)
gshmkvedpkdfpsellsflshavfsnrtlacfaiyttkekaallykkimekysvtfisr
hnsynhnilffltphrhrvsainnyaqklctfsflickgvnkeylmysaltrdpfsviee
slpgglkehdfnp

    Sequence, based on observed residues (ATOM records): (download) 
    >2itlB (B:)
pkdfpsellsflshavfsnrtlacfaiyttkekaallykkimekysvtfisrhnsynhni
lffltphrhrvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslp

  • Chain 'C':
    No sequence available.

  • Chain 'W':
    No sequence available.