PDB entry 2ijd

View 2ijd on RCSB PDB site
Description: Crystal Structure of the Poliovirus Precursor Protein 3CD
Class: hydrolase, transferase
Keywords: RNA polymerase, RNA-dependent RNA polymerase, poliovirus, picornavirus, protease
Deposited on 2006-09-29, released 2007-02-13
The last revision prior to the SCOP 1.73 freeze date was dated 2007-03-20, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: 0.201
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Picornain 3C, RNA-directed RNA polymerase
    Species: Poliovirus type 1
    Gene: 3CD
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03300 (0-643)
      • engineered (54)
      • engineered (57)
      • engineered (62)
      • engineered (146)
      • engineered (628)
      • engineered (637)
    Domains in SCOP 1.73: d2ijd11, d2ijd12
  • Chain '2':
    Compound: Picornain 3C, RNA-directed RNA polymerase
    Species: Poliovirus type 1
    Gene: 3CD
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03300 (0-643)
      • engineered (54)
      • engineered (57)
      • engineered (62)
      • engineered (146)
      • engineered (628)
      • engineered (637)
    Domains in SCOP 1.73: d2ijd21, d2ijd22
  • Heterogens: ZN, SO4, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2ijd1 (1:)
gpgfdyavamakrnivtattskgeftmlgvhdnvailpthaspgesividgkevailaak
aladqagtnleitiitlkrnekfrdirphiptqitetndgvlivntskypnmyvpvgavt
eqgylnlggrqtartlmynfptragqaggvitctgkvigmhvggngshgfaaalkrsyft
qsqgeiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeea
ifskyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsag
ypyvamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlie
asslndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgy
daslspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifn
sminnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpa
dksatfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrsl
cllawhngeeeynkflakirsvpigraldlpeystlydrwldsf

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2ijd2 (2:)
gpgfdyavamakrnivtattskgeftmlgvhdnvailpthaspgesividgkevailaak
aladqagtnleitiitlkrnekfrdirphiptqitetndgvlivntskypnmyvpvgavt
eqgylnlggrqtartlmynfptragqaggvitctgkvigmhvggngshgfaaalkrsyft
qsqgeiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeea
ifskyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsag
ypyvamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlie
asslndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgy
daslspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifn
sminnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpa
dksatfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrsl
cllawhngeeeynkflakirsvpigraldlpeystlydrwldsf