PDB entry 2ii5

View 2ii5 on RCSB PDB site
Description: Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (E2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (BCKDC), Isobutyryl-Coenzyme A-bound form
Class: transferase
Keywords: cubic core, homo trimer, Isobutyryl-CoA-bound form, TRANSFERASE
Deposited on 2006-09-27, released 2006-12-26
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.199
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
    Species: Bos taurus [TaxId:9913]
    Gene: DBT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ii5a_
  • Chain 'B':
    Compound: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
    Species: Bos taurus [TaxId:9913]
    Gene: DBT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ii5b_
  • Chain 'C':
    Compound: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
    Species: Bos taurus [TaxId:9913]
    Gene: DBT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ii5c_
  • Chain 'D':
    Compound: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
    Species: Bos taurus [TaxId:9913]
    Gene: DBT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ii5d_
  • Chain 'E':
    Compound: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
    Species: Bos taurus [TaxId:9913]
    Gene: DBT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ii5e_
  • Chain 'F':
    Compound: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
    Species: Bos taurus [TaxId:9913]
    Gene: DBT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ii5f_
  • Chain 'G':
    Compound: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
    Species: Bos taurus [TaxId:9913]
    Gene: DBT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ii5g_
  • Chain 'H':
    Compound: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
    Species: Bos taurus [TaxId:9913]
    Gene: DBT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ii5h_
  • Heterogens: ACT, CL, CO6, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2ii5A (A:)
    ghaeimppppkpkdrtipipiskppvfigkdrtepvkgfhkamvktmsaalkiphfgycd
    evdltelvklreelkpiafargiklsfmpfflkaaslgllqfpilnasvdencqnityka
    shnigiamdteqglivpnvknvqirsifeiatelnrlqklgsagqlstndliggtftlsn
    igsiggtyakpvilppevaigalgtikalprfnekgevckaqimnvswsadhriidgatv
    srfsnlwksylenpafmlldlk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ii5A (A:)
    gkdrtepvkgfhkamvktmsaalkiphfgycdevdltelvklreelkpiafargiklsfm
    pfflkaaslgllqfpilnasvdencqnitykashnigiamdteqglivpnvknvqirsif
    eiatelnrlqklgsagqlstndliggtftlsnigsiggtyakpvilppevaigalgtika
    lprfnekgevckaqimnvswsadhriidgatvsrfsnlwksylenpafmlldlk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2ii5B (B:)
    ghaeimppppkpkdrtipipiskppvfigkdrtepvkgfhkamvktmsaalkiphfgycd
    evdltelvklreelkpiafargiklsfmpfflkaaslgllqfpilnasvdencqnityka
    shnigiamdteqglivpnvknvqirsifeiatelnrlqklgsagqlstndliggtftlsn
    igsiggtyakpvilppevaigalgtikalprfnekgevckaqimnvswsadhriidgatv
    srfsnlwksylenpafmlldlk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ii5B (B:)
    gkdrtepvkgfhkamvktmsaalkiphfgycdevdltelvklreelkpiafargiklsfm
    pfflkaaslgllqfpilnasvdencqnitykashnigiamdteqglivpnvknvqirsif
    eiatelnrlqklgsagqlstndliggtftlsnigsiggtyakpvilppevaigalgtika
    lprfnekgevckaqimnvswsadhriidgatvsrfsnlwksylenpafmlldlk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2ii5C (C:)
    ghaeimppppkpkdrtipipiskppvfigkdrtepvkgfhkamvktmsaalkiphfgycd
    evdltelvklreelkpiafargiklsfmpfflkaaslgllqfpilnasvdencqnityka
    shnigiamdteqglivpnvknvqirsifeiatelnrlqklgsagqlstndliggtftlsn
    igsiggtyakpvilppevaigalgtikalprfnekgevckaqimnvswsadhriidgatv
    srfsnlwksylenpafmlldlk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ii5C (C:)
    gkdrtepvkgfhkamvktmsaalkiphfgycdevdltelvklreelkpiafargiklsfm
    pfflkaaslgllqfpilnasvdencqnitykashnigiamdteqglivpnvknvqirsif
    eiatelnrlqklgsagqlstndliggtftlsnigsiggtyakpvilppevaigalgtika
    lprfnekgevckaqimnvswsadhriidgatvsrfsnlwksylenpafmlldlk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2ii5D (D:)
    ghaeimppppkpkdrtipipiskppvfigkdrtepvkgfhkamvktmsaalkiphfgycd
    evdltelvklreelkpiafargiklsfmpfflkaaslgllqfpilnasvdencqnityka
    shnigiamdteqglivpnvknvqirsifeiatelnrlqklgsagqlstndliggtftlsn
    igsiggtyakpvilppevaigalgtikalprfnekgevckaqimnvswsadhriidgatv
    srfsnlwksylenpafmlldlk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ii5D (D:)
    gkdrtepvkgfhkamvktmsaalkiphfgycdevdltelvklreelkpiafargiklsfm
    pfflkaaslgllqfpilnasvdencqnitykashnigiamdteqglivpnvknvqirsif
    eiatelnrlqklgsagqlstndliggtftlsnigsiggtyakpvilppevaigalgtika
    lprfnekgevckaqimnvswsadhriidgatvsrfsnlwksylenpafmlldlk
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2ii5E (E:)
    ghaeimppppkpkdrtipipiskppvfigkdrtepvkgfhkamvktmsaalkiphfgycd
    evdltelvklreelkpiafargiklsfmpfflkaaslgllqfpilnasvdencqnityka
    shnigiamdteqglivpnvknvqirsifeiatelnrlqklgsagqlstndliggtftlsn
    igsiggtyakpvilppevaigalgtikalprfnekgevckaqimnvswsadhriidgatv
    srfsnlwksylenpafmlldlk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ii5E (E:)
    gkdrtepvkgfhkamvktmsaalkiphfgycdevdltelvklreelkpiafargiklsfm
    pfflkaaslgllqfpilnasvdencqnitykashnigiamdteqglivpnvknvqirsif
    eiatelnrlqklgsagqlstndliggtftlsnigsiggtyakpvilppevaigalgtika
    lprfnekgevckaqimnvswsadhriidgatvsrfsnlwksylenpafmlldlk
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2ii5F (F:)
    ghaeimppppkpkdrtipipiskppvfigkdrtepvkgfhkamvktmsaalkiphfgycd
    evdltelvklreelkpiafargiklsfmpfflkaaslgllqfpilnasvdencqnityka
    shnigiamdteqglivpnvknvqirsifeiatelnrlqklgsagqlstndliggtftlsn
    igsiggtyakpvilppevaigalgtikalprfnekgevckaqimnvswsadhriidgatv
    srfsnlwksylenpafmlldlk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ii5F (F:)
    gkdrtepvkgfhkamvktmsaalkiphfgycdevdltelvklreelkpiafargiklsfm
    pfflkaaslgllqfpilnasvdencqnitykashnigiamdteqglivpnvknvqirsif
    eiatelnrlqklgsagqlstndliggtftlsnigsiggtyakpvilppevaigalgtika
    lprfnekgevckaqimnvswsadhriidgatvsrfsnlwksylenpafmlldlk
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2ii5G (G:)
    ghaeimppppkpkdrtipipiskppvfigkdrtepvkgfhkamvktmsaalkiphfgycd
    evdltelvklreelkpiafargiklsfmpfflkaaslgllqfpilnasvdencqnityka
    shnigiamdteqglivpnvknvqirsifeiatelnrlqklgsagqlstndliggtftlsn
    igsiggtyakpvilppevaigalgtikalprfnekgevckaqimnvswsadhriidgatv
    srfsnlwksylenpafmlldlk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ii5G (G:)
    gkdrtepvkgfhkamvktmsaalkiphfgycdevdltelvklreelkpiafargiklsfm
    pfflkaaslgllqfpilnasvdencqnitykashnigiamdteqglivpnvknvqirsif
    eiatelnrlqklgsagqlstndliggtftlsnigsiggtyakpvilppevaigalgtika
    lprfnekgevckaqimnvswsadhriidgatvsrfsnlwksylenpafmlldlk
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2ii5H (H:)
    ghaeimppppkpkdrtipipiskppvfigkdrtepvkgfhkamvktmsaalkiphfgycd
    evdltelvklreelkpiafargiklsfmpfflkaaslgllqfpilnasvdencqnityka
    shnigiamdteqglivpnvknvqirsifeiatelnrlqklgsagqlstndliggtftlsn
    igsiggtyakpvilppevaigalgtikalprfnekgevckaqimnvswsadhriidgatv
    srfsnlwksylenpafmlldlk
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ii5H (H:)
    gkdrtepvkgfhkamvktmsaalkiphfgycdevdltelvklreelkpiafargiklsfm
    pfflkaaslgllqfpilnasvdencqnitykashnigiamdteqglivpnvknvqirsif
    eiatelnrlqklgsagqlstndliggtftlsnigsiggtyakpvilppevaigalgtika
    lprfnekgevckaqimnvswsadhriidgatvsrfsnlwksylenpafmlldlk