PDB entry 2igo

View 2igo on RCSB PDB site
Description: Crystal structure of pyranose 2-oxidase H167A mutant with 2-fluoro-2-deoxy-D-glucose
Class: oxidoreductase
Keywords: oxidoreductase, gmc oxidoreductase, h167a mutant, 2-fluoro-2-deoxy-d-glucose, rossmann fold, phbh fold, homotetramer, 8-alpha-(n3) histidyl flavinylation
Deposited on 2006-09-22, released 2006-10-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyranose oxidase
    Species: Trametes ochracea [TaxId:230624]
    Gene: p2o
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZA32
      • engineered (166)
    Domains in SCOPe 2.08: d2igoa1, d2igoa2
  • Chain 'B':
    Compound: Pyranose oxidase
    Species: Trametes ochracea [TaxId:230624]
    Gene: p2o
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZA32
      • engineered (166)
    Domains in SCOPe 2.08: d2igob1, d2igob2
  • Chain 'C':
    Compound: Pyranose oxidase
    Species: Trametes ochracea [TaxId:230624]
    Gene: p2o
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZA32
      • engineered (166)
    Domains in SCOPe 2.08: d2igoc1, d2igoc2
  • Chain 'D':
    Compound: Pyranose oxidase
    Species: Trametes ochracea [TaxId:230624]
    Gene: p2o
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZA32
      • engineered (166)
    Domains in SCOPe 2.08: d2igod1, d2igod2
  • Chain 'E':
    Compound: Pyranose oxidase
    Species: Trametes ochracea [TaxId:230624]
    Gene: p2o
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZA32
      • engineered (166)
    Domains in SCOPe 2.08: d2igoe1, d2igoe2
  • Chain 'F':
    Compound: Pyranose oxidase
    Species: Trametes ochracea [TaxId:230624]
    Gene: p2o
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZA32
      • engineered (166)
    Domains in SCOPe 2.08: d2igof1, d2igof2
  • Chain 'G':
    Compound: Pyranose oxidase
    Species: Trametes ochracea [TaxId:230624]
    Gene: p2o
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZA32
      • engineered (166)
    Domains in SCOPe 2.08: d2igog1, d2igog2
  • Chain 'H':
    Compound: Pyranose oxidase
    Species: Trametes ochracea [TaxId:230624]
    Gene: p2o
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7ZA32
      • engineered (166)
    Domains in SCOPe 2.08: d2igoh1, d2igoh2
  • Heterogens: SHG, FAD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2igoA (A:)
    mstsssdpffnfakssfrsaaaqkasasslpplpgpdkkvpgmdikydvvivgsgpigct
    yarelvgagykvamfdigeidsglkigahkkntveyqknidkfvnviqgqlmsvsvpvnt
    lvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvggmstawtcatprfdreqr
    pllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlvlnklteeykgqrdfqqip
    laatrrsptfvewssantvfdlqnrpntdapeerfnlfpavacervvrnalnseieslhi
    hdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnpanppellpslgsyiteqs
    lvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastnkhpdwwnekvknhmmqhq
    edplpipfedpepqvttlfqpshpwhtqihrdafsygavqqsidsrlivdwrffgrtepk
    eenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdmcvmsakiggflpgslpqf
    mepglvlhlggthrmgfdekednccvntdsrvfgfknlflggcgniptayganptltams
    laiksceyikqnftpspftseaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2igoA (A:)
    mdikydvvivgsgpigctyarelvgagykvamfdigeidsglkigahkkntveyqknidk
    fvnviqgqlmsvsvpvntlvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvg
    gmstawtcatprfdreqrpllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlv
    lnklteeykgqrdfqqiplaatrrsptfvewssantvfdlqnrpntdapeerfnlfpava
    cervvrnalnseieslhihdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnp
    anppellpslgsyiteqslvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastn
    khpdwwnekvknhmmqhqedplpipfedpepqvttlfqpshpwhtqihrdafsygavqqs
    idsrlivdwrffgrtepkeenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdm
    cvmsakiggflpgslpqfmepglvlhlggthrmgfdekednccvntdsrvfgfknlflgg
    cgniptayganptltamslaiksceyikqnftpspft
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2igoB (B:)
    mstsssdpffnfakssfrsaaaqkasasslpplpgpdkkvpgmdikydvvivgsgpigct
    yarelvgagykvamfdigeidsglkigahkkntveyqknidkfvnviqgqlmsvsvpvnt
    lvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvggmstawtcatprfdreqr
    pllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlvlnklteeykgqrdfqqip
    laatrrsptfvewssantvfdlqnrpntdapeerfnlfpavacervvrnalnseieslhi
    hdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnpanppellpslgsyiteqs
    lvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastnkhpdwwnekvknhmmqhq
    edplpipfedpepqvttlfqpshpwhtqihrdafsygavqqsidsrlivdwrffgrtepk
    eenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdmcvmsakiggflpgslpqf
    mepglvlhlggthrmgfdekednccvntdsrvfgfknlflggcgniptayganptltams
    laiksceyikqnftpspftseaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2igoB (B:)
    mdikydvvivgsgpigctyarelvgagykvamfdigeidsglkigahkkntveyqknidk
    fvnviqgqlmsvsvpvntlvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvg
    gmstawtcatprfdreqrpllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlv
    lnklteeykgqrdfqqiplaatrrsptfvewssantvfdlqnrpntdapeerfnlfpava
    cervvrnalnseieslhihdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnp
    anppellpslgsyiteqslvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastn
    khpdwwnekvknhmmqhqedplpipfedpepqvttlfqpshpwhtqihrdafsygavqqs
    idsrlivdwrffgrtepkeenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdm
    cvmsakiggflpgslpqfmepglvlhlggthrmgfdekednccvntdsrvfgfknlflgg
    cgniptayganptltamslaiksceyikqnftpspft
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2igoC (C:)
    mstsssdpffnfakssfrsaaaqkasasslpplpgpdkkvpgmdikydvvivgsgpigct
    yarelvgagykvamfdigeidsglkigahkkntveyqknidkfvnviqgqlmsvsvpvnt
    lvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvggmstawtcatprfdreqr
    pllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlvlnklteeykgqrdfqqip
    laatrrsptfvewssantvfdlqnrpntdapeerfnlfpavacervvrnalnseieslhi
    hdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnpanppellpslgsyiteqs
    lvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastnkhpdwwnekvknhmmqhq
    edplpipfedpepqvttlfqpshpwhtqihrdafsygavqqsidsrlivdwrffgrtepk
    eenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdmcvmsakiggflpgslpqf
    mepglvlhlggthrmgfdekednccvntdsrvfgfknlflggcgniptayganptltams
    laiksceyikqnftpspftseaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2igoC (C:)
    mdikydvvivgsgpigctyarelvgagykvamfdigeidsglkigahkkntveyqknidk
    fvnviqgqlmsvsvpvntlvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvg
    gmstawtcatprfdreqrpllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlv
    lnklteeykgqrdfqqiplaatrrsptfvewssantvfdlqnrpntdapeerfnlfpava
    cervvrnalnseieslhihdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnp
    anppellpslgsyiteqslvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastn
    khpdwwnekvknhmmqhqedplpipfedpepqvttlfqpshpwhtqihrdafsygavqqs
    idsrlivdwrffgrtepkeenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdm
    cvmsakiggflpgslpqfmepglvlhlggthrmgfdekednccvntdsrvfgfknlflgg
    cgniptayganptltamslaiksceyikqnftpspft
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2igoD (D:)
    mstsssdpffnfakssfrsaaaqkasasslpplpgpdkkvpgmdikydvvivgsgpigct
    yarelvgagykvamfdigeidsglkigahkkntveyqknidkfvnviqgqlmsvsvpvnt
    lvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvggmstawtcatprfdreqr
    pllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlvlnklteeykgqrdfqqip
    laatrrsptfvewssantvfdlqnrpntdapeerfnlfpavacervvrnalnseieslhi
    hdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnpanppellpslgsyiteqs
    lvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastnkhpdwwnekvknhmmqhq
    edplpipfedpepqvttlfqpshpwhtqihrdafsygavqqsidsrlivdwrffgrtepk
    eenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdmcvmsakiggflpgslpqf
    mepglvlhlggthrmgfdekednccvntdsrvfgfknlflggcgniptayganptltams
    laiksceyikqnftpspftseaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2igoD (D:)
    mdikydvvivgsgpigctyarelvgagykvamfdigeidsglkigahkkntveyqknidk
    fvnviqgqlmsvsvpvntlvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvg
    gmstawtcatprfdreqrpllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlv
    lnklteeykgqrdfqqiplaatrrsptfvewssantvfdlqnrpntdapeerfnlfpava
    cervvrnalnseieslhihdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnp
    anppellpslgsyiteqslvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastn
    khpdwwnekvknhmmqhqedplpipfedpepqvttlfqpshpwhtqihrdafsygavqqs
    idsrlivdwrffgrtepkeenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdm
    cvmsakiggflpgslpqfmepglvlhlggthrmgfdekednccvntdsrvfgfknlflgg
    cgniptayganptltamslaiksceyikqnftpspft
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2igoE (E:)
    mstsssdpffnfakssfrsaaaqkasasslpplpgpdkkvpgmdikydvvivgsgpigct
    yarelvgagykvamfdigeidsglkigahkkntveyqknidkfvnviqgqlmsvsvpvnt
    lvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvggmstawtcatprfdreqr
    pllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlvlnklteeykgqrdfqqip
    laatrrsptfvewssantvfdlqnrpntdapeerfnlfpavacervvrnalnseieslhi
    hdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnpanppellpslgsyiteqs
    lvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastnkhpdwwnekvknhmmqhq
    edplpipfedpepqvttlfqpshpwhtqihrdafsygavqqsidsrlivdwrffgrtepk
    eenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdmcvmsakiggflpgslpqf
    mepglvlhlggthrmgfdekednccvntdsrvfgfknlflggcgniptayganptltams
    laiksceyikqnftpspftseaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2igoE (E:)
    mdikydvvivgsgpigctyarelvgagykvamfdigeidsglkigahkkntveyqknidk
    fvnviqgqlmsvsvpvntlvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvg
    gmstawtcatprfdreqrpllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlv
    lnklteeykgqrdfqqiplaatrrsptfvewssantvfdlqnrpntdapeerfnlfpava
    cervvrnalnseieslhihdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnp
    anppellpslgsyiteqslvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastn
    khpdwwnekvknhmmqhqedplpipfedpepqvttlfqpshpwhtqihrdafsygavqqs
    idsrlivdwrffgrtepkeenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdm
    cvmsakiggflpgslpqfmepglvlhlggthrmgfdekednccvntdsrvfgfknlflgg
    cgniptayganptltamslaiksceyikqnftpspft
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2igoF (F:)
    mstsssdpffnfakssfrsaaaqkasasslpplpgpdkkvpgmdikydvvivgsgpigct
    yarelvgagykvamfdigeidsglkigahkkntveyqknidkfvnviqgqlmsvsvpvnt
    lvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvggmstawtcatprfdreqr
    pllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlvlnklteeykgqrdfqqip
    laatrrsptfvewssantvfdlqnrpntdapeerfnlfpavacervvrnalnseieslhi
    hdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnpanppellpslgsyiteqs
    lvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastnkhpdwwnekvknhmmqhq
    edplpipfedpepqvttlfqpshpwhtqihrdafsygavqqsidsrlivdwrffgrtepk
    eenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdmcvmsakiggflpgslpqf
    mepglvlhlggthrmgfdekednccvntdsrvfgfknlflggcgniptayganptltams
    laiksceyikqnftpspftseaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2igoF (F:)
    mdikydvvivgsgpigctyarelvgagykvamfdigeidsglkigahkkntveyqknidk
    fvnviqgqlmsvsvpvntlvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvg
    gmstawtcatprfdreqrpllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlv
    lnklteeykgqrdfqqiplaatrrsptfvewssantvfdlqnrpntdapeerfnlfpava
    cervvrnalnseieslhihdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnp
    anppellpslgsyiteqslvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastn
    khpdwwnekvknhmmqhqedplpipfedpepqvttlfqpshpwhtqihrdafsygavqqs
    idsrlivdwrffgrtepkeenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdm
    cvmsakiggflpgslpqfmepglvlhlggthrmgfdekednccvntdsrvfgfknlflgg
    cgniptayganptltamslaiksceyikqnftpspft
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2igoG (G:)
    mstsssdpffnfakssfrsaaaqkasasslpplpgpdkkvpgmdikydvvivgsgpigct
    yarelvgagykvamfdigeidsglkigahkkntveyqknidkfvnviqgqlmsvsvpvnt
    lvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvggmstawtcatprfdreqr
    pllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlvlnklteeykgqrdfqqip
    laatrrsptfvewssantvfdlqnrpntdapeerfnlfpavacervvrnalnseieslhi
    hdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnpanppellpslgsyiteqs
    lvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastnkhpdwwnekvknhmmqhq
    edplpipfedpepqvttlfqpshpwhtqihrdafsygavqqsidsrlivdwrffgrtepk
    eenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdmcvmsakiggflpgslpqf
    mepglvlhlggthrmgfdekednccvntdsrvfgfknlflggcgniptayganptltams
    laiksceyikqnftpspftseaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2igoG (G:)
    mdikydvvivgsgpigctyarelvgagykvamfdigeidsglkigahkkntveyqknidk
    fvnviqgqlmsvsvpvntlvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvg
    gmstawtcatprfdreqrpllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlv
    lnklteeykgqrdfqqiplaatrrsptfvewssantvfdlqnrpntdapeerfnlfpava
    cervvrnalnseieslhihdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnp
    anppellpslgsyiteqslvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastn
    khpdwwnekvknhmmqhqedplpipfedpepqvttlfqpshpwhtqihrdafsygavqqs
    idsrlivdwrffgrtepkeenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdm
    cvmsakiggflpgslpqfmepglvlhlggthrmgfdekednccvntdsrvfgfknlflgg
    cgniptayganptltamslaiksceyikqnftpspft
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2igoH (H:)
    mstsssdpffnfakssfrsaaaqkasasslpplpgpdkkvpgmdikydvvivgsgpigct
    yarelvgagykvamfdigeidsglkigahkkntveyqknidkfvnviqgqlmsvsvpvnt
    lvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvggmstawtcatprfdreqr
    pllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlvlnklteeykgqrdfqqip
    laatrrsptfvewssantvfdlqnrpntdapeerfnlfpavacervvrnalnseieslhi
    hdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnpanppellpslgsyiteqs
    lvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastnkhpdwwnekvknhmmqhq
    edplpipfedpepqvttlfqpshpwhtqihrdafsygavqqsidsrlivdwrffgrtepk
    eenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdmcvmsakiggflpgslpqf
    mepglvlhlggthrmgfdekednccvntdsrvfgfknlflggcgniptayganptltams
    laiksceyikqnftpspftseaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >2igoH (H:)
    mdikydvvivgsgpigctyarelvgagykvamfdigeidsglkigahkkntveyqknidk
    fvnviqgqlmsvsvpvntlvvdtlsptswqastffvrngsnpeqdplrnlsgqavtrvvg
    gmstawtcatprfdreqrpllvkddadaddaewdrlytkaesyfqtgtdqfkesirhnlv
    lnklteeykgqrdfqqiplaatrrsptfvewssantvfdlqnrpntdapeerfnlfpava
    cervvrnalnseieslhihdlisgdrfeikadvyvltagavhntqllvnsgfgqlgrpnp
    anppellpslgsyiteqslvfcqtvmstelidsvksdmtirgtpgeltysvtytpgastn
    khpdwwnekvknhmmqhqedplpipfedpepqvttlfqpshpwhtqihrdafsygavqqs
    idsrlivdwrffgrtepkeenklwfsdkitdaynmpqptfdfrfpagrtskeaedmmtdm
    cvmsakiggflpgslpqfmepglvlhlggthrmgfdekednccvntdsrvfgfknlflgg
    cgniptayganptltamslaiksceyikqnftpspft