PDB entry 2ib5

View 2ib5 on RCSB PDB site
Description: Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus
Class: luminescent protein
Keywords: beta barrel, alpha helix, chromoprotein, chromophore, blue, GFP-like protein, LUMINESCENT PROTEIN
Deposited on 2006-09-10, released 2006-10-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.195
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ7 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib5a_
  • Chain 'B':
    Compound: Chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ7 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib5b_
  • Chain 'C':
    Compound: Chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ7 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib5c_
  • Chain 'D':
    Compound: Chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ7 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib5d_
  • Chain 'E':
    Compound: Chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ7 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib5e_
  • Chain 'F':
    Compound: Chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ7 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib5f_
  • Chain 'G':
    Compound: Chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ7 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib5g_
  • Chain 'H':
    Compound: Chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ7 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib5h_
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ib5A (A:)
gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
ltpncqygsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

    Sequence, based on observed residues (ATOM records): (download) 
    >2ib5A (A:)
isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncqy
gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ib5B (B:)
gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
ltpncqygsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

    Sequence, based on observed residues (ATOM records): (download) 
    >2ib5B (B:)
isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncqy
gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2ib5C (C:)
gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
ltpncqygsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

    Sequence, based on observed residues (ATOM records): (download) 
    >2ib5C (C:)
isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncqy
gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2ib5D (D:)
gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
ltpncqygsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

    Sequence, based on observed residues (ATOM records): (download) 
    >2ib5D (D:)
isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncqy
gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2ib5E (E:)
gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
ltpncqygsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

    Sequence, based on observed residues (ATOM records): (download) 
    >2ib5E (E:)
isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncqy
gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2ib5F (F:)
gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
ltpncqygsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

    Sequence, based on observed residues (ATOM records): (download) 
    >2ib5F (F:)
isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncqy
gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2ib5G (G:)
gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
ltpncqygsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

    Sequence, based on observed residues (ATOM records): (download) 
    >2ib5G (G:)
isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncqy
gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2ib5H (H:)
gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
ltpncqygsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn

    Sequence, based on observed residues (ATOM records): (download) 
    >2ib5H (H:)
isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncqy
gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn