PDB entry 2i9f

View 2i9f on RCSB PDB site
Description: Structure of the equine arterivirus nucleocapsid protein
Class: viral protein
Keywords: virus, capsid, assembly, viral protein
Deposited on 2006-09-05, released 2007-05-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.219
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleocapsid
    Species: Equine arteritis virus [TaxId:11047]
    Gene: ORF7
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q66526 (8-End)
      • expression tag (5-7)
      • modified residue (33)
    Domains in SCOPe 2.08: d2i9fa1, d2i9fa2
  • Chain 'B':
    Compound: Nucleocapsid
    Species: Equine arteritis virus [TaxId:11047]
    Gene: ORF7
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q66526 (8-End)
      • expression tag (6-7)
      • modified residue (33)
    Domains in SCOPe 2.08: d2i9fb2, d2i9fb3
  • Chain 'C':
    Compound: Nucleocapsid
    Species: Equine arteritis virus [TaxId:11047]
    Gene: ORF7
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q66526
      • modified residue (33)
    Domains in SCOPe 2.08: d2i9fc_
  • Chain 'D':
    Compound: Nucleocapsid
    Species: Equine arteritis virus [TaxId:11047]
    Gene: ORF7
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q66526 (8-End)
      • expression tag (5-7)
      • modified residue (33)
    Domains in SCOPe 2.08: d2i9fd2, d2i9fd3
  • Heterogens: CL, NA, DTT, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2i9fA (A:)
mahhhhhhepgdlrhdlnqqeratlssnvqrffmighgsltadaggltytvswvptkqiq
rkvapsagp

    Sequence, based on observed residues (ATOM records): (download) 
    >2i9fA (A:)
hhhepgdlrhdlnqqeratlssnvqrffmighgsltadaggltytvswvptkqiqrkva

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2i9fB (B:)
mahhhhhhepgdlrhdlnqqeratlssnvqrffmighgsltadaggltytvswvptkqiq
rkvapsagp

    Sequence, based on observed residues (ATOM records): (download) 
    >2i9fB (B:)
hhepgdlrhdlnqqeratlssnvqrffmighgsltadaggltytvswvptkqiqrkva

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2i9fC (C:)
mahhhhhhepgdlrhdlnqqeratlssnvqrffmighgsltadaggltytvswvptkqiq
rkvapsagp

    Sequence, based on observed residues (ATOM records): (download) 
    >2i9fC (C:)
pgdlrhdlnqqeratlssnvqrffmighgsltadaggltytvswvptkqiqrkva

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2i9fD (D:)
mahhhhhhepgdlrhdlnqqeratlssnvqrffmighgsltadaggltytvswvptkqiq
rkvapsagp

    Sequence, based on observed residues (ATOM records): (download) 
    >2i9fD (D:)
hhhepgdlrhdlnqqeratlssnvqrffmighgsltadaggltytvswvptkqiqrkva