PDB entry 2i25

View 2i25 on RCSB PDB site
Description: Crystal structure analysis of the nurse shark New antigen Receptor PBLA8 variable domain in complex with lysozyme
Class: immune system
Keywords: immunoglobulin fold, protein-protein complex, immune system
Deposited on 2006-08-15, released 2007-03-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.187
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2i25l_
  • Chain 'M':
    Compound: Lysozyme C
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2i25m_
  • Chain 'N':
    Compound: New Antigen Receptor PBLA8
    Species: Ginglymostoma cirratum [TaxId:7801]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2i25n1, d2i25n2
  • Chain 'O':
    Compound: New Antigen Receptor PBLA8
    Species: Ginglymostoma cirratum [TaxId:7801]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2i25o1, d2i25o2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2i25L (L:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2i25M (M:)
    kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
    rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
    qawirgcrl
    

  • Chain 'N':
    Sequence, based on SEQRES records: (download)
    >2i25N (N:)
    arvdqtpqritketgesltincvvrdsrcvlstgywyrkppgsrneesisdggryvetvn
    rgsksfslrindltvkdsgtyrckpesrygsydavcaalndqygggtvvtvnaaahhhhh
    h
    

    Sequence, based on observed residues (ATOM records): (download)
    >2i25N (N:)
    rvdqtpqritketgesltincvvrdsrcvlstgywyrkppgsrneesisdggryvetvnr
    gsksfslrindltvkdsgtyrckpesrygsydavcaalndqygggtvvtvnaaa
    

  • Chain 'O':
    Sequence, based on SEQRES records: (download)
    >2i25O (O:)
    arvdqtpqritketgesltincvvrdsrcvlstgywyrkppgsrneesisdggryvetvn
    rgsksfslrindltvkdsgtyrckpesrygsydavcaalndqygggtvvtvnaaahhhhh
    h
    

    Sequence, based on observed residues (ATOM records): (download)
    >2i25O (O:)
    rvdqtpqritketgesltincvvrdsrcvlstgywyrkppgsrneesisdggryvetvnr
    gsksfslrindltvkdsgtyrckpesrygsydavcaalndqygggtvvtvnaaahhh