PDB entry 2i25
View 2i25 on RCSB PDB site
Description: Crystal structure analysis of the nurse shark New antigen Receptor PBLA8 variable domain in complex with lysozyme
Class: immune system
Keywords: immunoglobulin fold, protein-protein complex, immune system
Deposited on
2006-08-15, released
2007-03-06
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.187
AEROSPACI score: 0.52
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'L':
Compound: Lysozyme C
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2i25l_ - Chain 'M':
Compound: Lysozyme C
Species: Gallus gallus [TaxId:9031]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2i25m_ - Chain 'N':
Compound: New Antigen Receptor PBLA8
Species: Ginglymostoma cirratum [TaxId:7801]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2i25n1, d2i25n2 - Chain 'O':
Compound: New Antigen Receptor PBLA8
Species: Ginglymostoma cirratum [TaxId:7801]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2i25o1, d2i25o2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>2i25L (L:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl
- Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)
>2i25M (M:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl
- Chain 'N':
Sequence, based on SEQRES records: (download)
>2i25N (N:)
arvdqtpqritketgesltincvvrdsrcvlstgywyrkppgsrneesisdggryvetvn
rgsksfslrindltvkdsgtyrckpesrygsydavcaalndqygggtvvtvnaaahhhhh
h
Sequence, based on observed residues (ATOM records): (download)
>2i25N (N:)
rvdqtpqritketgesltincvvrdsrcvlstgywyrkppgsrneesisdggryvetvnr
gsksfslrindltvkdsgtyrckpesrygsydavcaalndqygggtvvtvnaaa
- Chain 'O':
Sequence, based on SEQRES records: (download)
>2i25O (O:)
arvdqtpqritketgesltincvvrdsrcvlstgywyrkppgsrneesisdggryvetvn
rgsksfslrindltvkdsgtyrckpesrygsydavcaalndqygggtvvtvnaaahhhhh
h
Sequence, based on observed residues (ATOM records): (download)
>2i25O (O:)
rvdqtpqritketgesltincvvrdsrcvlstgywyrkppgsrneesisdggryvetvnr
gsksfslrindltvkdsgtyrckpesrygsydavcaalndqygggtvvtvnaaahhh