PDB entry 2hzv

View 2hzv on RCSB PDB site
Description: NikR-operator DNA complex
Class: metal binding protein/DNA
Keywords: nickel, transcription factor, protein-dna complex, ribbon-helix-helix, METAL BINDING PROTEIN/DNA COMPLEX
Deposited on 2006-08-09, released 2006-08-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.261
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nickel-responsive regulator
    Species: Escherichia coli [TaxId:562]
    Gene: nikR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6Z6 (0-End)
      • modified residue (0)
      • modified residue (104)
    Domains in SCOPe 2.08: d2hzva1, d2hzva2
  • Chain 'B':
    Compound: Nickel-responsive regulator
    Species: Escherichia coli [TaxId:562]
    Gene: nikR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6Z6 (0-End)
      • modified residue (0)
      • modified residue (104)
    Domains in SCOPe 2.08: d2hzvb1, d2hzvb2
  • Chain 'C':
    Compound: Nickel-responsive regulator
    Species: Escherichia coli [TaxId:562]
    Gene: nikR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6Z6 (0-End)
      • modified residue (0)
      • modified residue (104)
    Domains in SCOPe 2.08: d2hzvc1, d2hzvc2
  • Chain 'D':
    Compound: Nickel-responsive regulator
    Species: Escherichia coli [TaxId:562]
    Gene: nikR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6Z6 (0-End)
      • modified residue (0)
      • modified residue (104)
    Domains in SCOPe 2.08: d2hzvd1, d2hzvd2
  • Chain 'E':
    Compound: Nickel-responsive regulator
    Species: Escherichia coli [TaxId:562]
    Gene: nikR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6Z6 (0-End)
      • modified residue (0)
      • modified residue (104)
    Domains in SCOPe 2.08: d2hzve1, d2hzve2
  • Chain 'F':
    Compound: Nickel-responsive regulator
    Species: Escherichia coli [TaxId:562]
    Gene: nikR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6Z6 (0-End)
      • modified residue (0)
      • modified residue (104)
    Domains in SCOPe 2.08: d2hzvf1, d2hzvf2
  • Chain 'G':
    Compound: Nickel-responsive regulator
    Species: Escherichia coli [TaxId:562]
    Gene: nikR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6Z6 (0-End)
      • modified residue (0)
      • modified residue (104)
    Domains in SCOPe 2.08: d2hzvg1, d2hzvg2
  • Chain 'H':
    Compound: Nickel-responsive regulator
    Species: Escherichia coli [TaxId:562]
    Gene: nikR
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6Z6 (0-End)
      • modified residue (0)
      • modified residue (104)
    Domains in SCOPe 2.08: d2hzvh1, d2hzvh2
  • Chain 'I':
    Compound: 5'-d(*ap*gp*tp*ap*tp*gp*ap*cp*gp*ap*ap*tp*ap*cp*tp*tp*ap*ap*ap*ap*tp*cp*gp*tp*cp*ap*tp*ap*cp*t)-3'
  • Chain 'J':
    Compound: 5'-d(*ap*gp*tp*ap*tp*gp*ap*cp*gp*ap*tp*tp*tp*tp*ap*ap*gp*tp*ap*tp*tp*cp*gp*tp*cp*ap*tp*ap*cp*t)-3'
  • Chain 'K':
    Compound: 5'-d(*ap*gp*tp*ap*tp*gp*ap*cp*gp*ap*ap*tp*ap*cp*tp*tp*ap*ap*ap*ap*tp*cp*gp*tp*cp*ap*tp*ap*cp*t)-3'
  • Chain 'L':
    Compound: 5'-d(*ap*gp*tp*ap*tp*gp*ap*cp*gp*ap*tp*tp*tp*tp*ap*ap*gp*tp*ap*tp*tp*cp*gp*tp*cp*ap*tp*ap*cp*t)-3'
  • Heterogens: NI, K

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2hzvA (A:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpked

    Sequence, based on observed residues (ATOM records): (download) 
    >2hzvA (A:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2hzvB (B:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpked

    Sequence, based on observed residues (ATOM records): (download) 
    >2hzvB (B:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2hzvC (C:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpked

    Sequence, based on observed residues (ATOM records): (download) 
    >2hzvC (C:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2hzvD (D:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpked

    Sequence, based on observed residues (ATOM records): (download) 
    >2hzvD (D:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2hzvE (E:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpked

    Sequence, based on observed residues (ATOM records): (download) 
    >2hzvE (E:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2hzvF (F:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpked

    Sequence, based on observed residues (ATOM records): (download) 
    >2hzvF (F:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2hzvG (G:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpked

    Sequence, based on observed residues (ATOM records): (download) 
    >2hzvG (G:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2hzvH (H:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpked

    Sequence, based on observed residues (ATOM records): (download) 
    >2hzvH (H:)
mqrvtitldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvy
ehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrg
vrhghlqclpk

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.