PDB entry 2hyb

View 2hyb on RCSB PDB site
Description: Crystal Structure of Hexameric DsrEFH
Class: transferase
Keywords: DsrE, DsrF, DsrH, Crystal structure, Sulfur, Structural Genomics, PSI, Protein Structure Initiative, Berkeley Structural Genomics Center, BSGC, TRANSFERASE
Deposited on 2006-08-04, released 2007-07-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.206
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative sulfurtransferase dsrE
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hyba_
  • Chain 'B':
    Compound: Intracellular sulfur oxidation protein dsrF
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybb_
  • Chain 'C':
    Compound: DsrH
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybc_
  • Chain 'D':
    Compound: Putative sulfurtransferase dsrE
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybd_
  • Chain 'E':
    Compound: Intracellular sulfur oxidation protein dsrF
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybe_
  • Chain 'F':
    Compound: DsrH
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybf_
  • Chain 'G':
    Compound: Putative sulfurtransferase dsrE
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybg_
  • Chain 'H':
    Compound: Intracellular sulfur oxidation protein dsrF
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybh_
  • Chain 'I':
    Compound: DsrH
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybi_
  • Chain 'J':
    Compound: Putative sulfurtransferase dsrE
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybj_
  • Chain 'K':
    Compound: Intracellular sulfur oxidation protein dsrF
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybk_
  • Chain 'L':
    Compound: DsrH
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybl_
  • Chain 'M':
    Compound: Putative sulfurtransferase dsrE
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybm_
  • Chain 'N':
    Compound: Intracellular sulfur oxidation protein dsrF
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybn_
  • Chain 'O':
    Compound: DsrH
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybo_
  • Chain 'P':
    Compound: Putative sulfurtransferase dsrE
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybp_
  • Chain 'Q':
    Compound: Intracellular sulfur oxidation protein dsrF
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybq_
  • Chain 'R':
    Compound: DsrH
    Species: Allochromatium vinosum [TaxId:1049]
    Gene: dsrH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hybr_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hybA (A:)
mkfalqinegpyqhqasdsayqfakaalekgheifrvffyhdgvnnstrlttppqddrhi
vnrwaelaeqyeldmvvcvaaaqrrgivdegeasrngkdatnihpkfrisglgqlveaai
qadrlvvfgd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2hybB (B:)
msevvkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgi
gmknfsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevids
arvselmnesdavfsf

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybB (B:)
vkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgigmkn
fsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevidsarvs
elmnesdavfsf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2hybC (C:)
msilhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklkly
vlgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybC (C:)
silhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklklyv
lgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hybD (D:)
mkfalqinegpyqhqasdsayqfakaalekgheifrvffyhdgvnnstrlttppqddrhi
vnrwaelaeqyeldmvvcvaaaqrrgivdegeasrngkdatnihpkfrisglgqlveaai
qadrlvvfgd

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2hybE (E:)
msevvkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgi
gmknfsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevids
arvselmnesdavfsf

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybE (E:)
vkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgigmkn
fsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevidsarvs
elmnesdavfsf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2hybF (F:)
msilhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklkly
vlgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybF (F:)
silhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklklyv
lgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hybG (G:)
mkfalqinegpyqhqasdsayqfakaalekgheifrvffyhdgvnnstrlttppqddrhi
vnrwaelaeqyeldmvvcvaaaqrrgivdegeasrngkdatnihpkfrisglgqlveaai
qadrlvvfgd

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2hybH (H:)
msevvkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgi
gmknfsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevids
arvselmnesdavfsf

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybH (H:)
vkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgigmkn
fsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevidsarvs
elmnesdavfsf

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >2hybI (I:)
msilhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklkly
vlgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybI (I:)
silhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklklyv
lgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hybJ (J:)
mkfalqinegpyqhqasdsayqfakaalekgheifrvffyhdgvnnstrlttppqddrhi
vnrwaelaeqyeldmvvcvaaaqrrgivdegeasrngkdatnihpkfrisglgqlveaai
qadrlvvfgd

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >2hybK (K:)
msevvkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgi
gmknfsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevids
arvselmnesdavfsf

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybK (K:)
vkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgigmkn
fsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevidsarvs
elmnesdavfsf

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >2hybL (L:)
msilhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklkly
vlgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybL (L:)
silhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklklyv
lgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hybM (M:)
mkfalqinegpyqhqasdsayqfakaalekgheifrvffyhdgvnnstrlttppqddrhi
vnrwaelaeqyeldmvvcvaaaqrrgivdegeasrngkdatnihpkfrisglgqlveaai
qadrlvvfgd

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >2hybN (N:)
msevvkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgi
gmknfsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevids
arvselmnesdavfsf

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybN (N:)
vkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgigmkn
fsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevidsarvs
elmnesdavfsf

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >2hybO (O:)
msilhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklkly
vlgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybO (O:)
silhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklklyv
lgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hybP (P:)
mkfalqinegpyqhqasdsayqfakaalekgheifrvffyhdgvnnstrlttppqddrhi
vnrwaelaeqyeldmvvcvaaaqrrgivdegeasrngkdatnihpkfrisglgqlveaai
qadrlvvfgd

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >2hybQ (Q:)
msevvkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgi
gmknfsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevids
arvselmnesdavfsf

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybQ (Q:)
vkkfmylnrkapygtiyawealevvligaafdqdvcvlflddgvyqltrgqdtkgigmkn
fsptyrtlgdyevrriyvdrdsleargltqddlveiafedmeteeefdnivevidsarvs
elmnesdavfsf

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >2hybR (R:)
msilhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklkly
vlgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl

    Sequence, based on observed residues (ATOM records): (download) 
    >2hybR (R:)
silhtvnkspfernslesclkfategasvllfedgiyaalagtrvesqvtealgklklyv
lgpdlkargfsdervipgisvvdyagfvdlttecdtvqawl