PDB entry 2hgj

View 2hgj on RCSB PDB site
Description: Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. This entry 2HGJ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGI.
Class: ribosome
Keywords: ribosome, no-template, codon-mimicry
Deposited on 2006-06-27, released 2006-11-07
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 5 Å
R-factor: 0.263
AEROSPACI score: -0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: 50S ribosomal protein L29
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgj11
  • Chain '2':
    Compound: 50S ribosomal protein L30
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgj21
  • Chain '3':
    Compound: 50S ribosomal protein L31
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgj31
  • Chain '4':
    Compound: 50S ribosomal protein L32
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgj41
  • Chain '5':
    Compound: 50S ribosomal protein L33
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgj51
  • Chain '6':
    Compound: 50S ribosomal protein L34
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgj61
  • Chain '7':
    Compound: 50S ribosomal protein L35
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgj71
  • Chain '8':
    Compound: 50S ribosomal protein L36
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgj81
  • Chain 'A':
    Compound: 23S ribosomal RNA
    Species: Thermus thermophilus [TaxId:300852]
  • Chain 'B':
    Compound: 5S ribosomal RNA
    Species: Thermus thermophilus [TaxId:300852]
  • Chain 'C':
    Compound: 50s ribosomal protein l1
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjc1
  • Chain 'D':
    Compound: 50S ribosomal protein L2
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjd1, d2hgjd2
  • Chain 'E':
    Compound: 50S ribosomal protein L3
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgje1
  • Chain 'F':
    Compound: 50S ribosomal protein L4
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjf1
  • Chain 'G':
    Compound: 50S ribosomal protein L5
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjg1
  • Chain 'H':
    Compound: 50S ribosomal protein L6
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjh1, d2hgjh2
  • Chain 'K':
    Compound: 50S ribosomal protein L9
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjk1, d2hgjk2
  • Chain 'L':
    Compound: 50S ribosomal protein L11
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjl1, d2hgjl2
  • Chain 'M':
    Compound: 50S ribosomal protein L13
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjm1
  • Chain 'N':
    Compound: 50S ribosomal protein L14
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjn1
  • Chain 'O':
    Compound: 50S ribosomal protein L15
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjo1
  • Chain 'P':
    Compound: 50S ribosomal protein L16
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjp1
  • Chain 'Q':
    Compound: 50S ribosomal protein L17
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjq1
  • Chain 'R':
    Compound: 50S ribosomal protein L18
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjr1
  • Chain 'S':
    Compound: 50S ribosomal protein L19
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 50S ribosomal protein L20
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjt1
  • Chain 'U':
    Compound: 50S ribosomal protein L21
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgju1
  • Chain 'V':
    Compound: 50S ribosomal protein L22
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjv1
  • Chain 'W':
    Compound: 50S ribosomal protein L23
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjw1
  • Chain 'X':
    Compound: 50S ribosomal protein L24
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjx1
  • Chain 'Y':
    Compound: 50S ribosomal protein L25
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2hgjy1
  • Chain 'Z':
    Compound: 50S ribosomal protein L27
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hgj1 (1:)
mrkqleearklspveleklvrekkrelmelrfqasigqlsqnhkirdlkrqiarlltvln
ekrrqna

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >2hgj2 (2:)
mprlkvklvkspigypkdqkaalkalglrrlqqervledtpairgnvekvahlvrvevve

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgj2 (2:)
prlkvklvkspigypkdqkaalkalglrrlqqervledtpairgnvekvahlvrvevve

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hgj3 (3:)
mkegihpklvpariicgcgnvietystkpeiyvevcskchpfytgqqrfvdtegrverfq
rrygdsyrkgr

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >2hgj4 (4:)
makhpvpkkktskarrdarrshhaltpptlvpcpeckamkpphtvcpecgyyagrkvlev

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgj4 (4:)
hpvpkkktskarrdarrshhaltpptlvpcpeckamkpphtvcpecgyyagrkvlev

  • Chain '5':
    Sequence, based on SEQRES records: (download) 
    >2hgj5 (5:)
masevriklllecteckrrnyateknkrntpnklelrkycpwcrkhtvhrevki

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgj5 (5:)
riklllecteckrrnyateknkrntpnklelrkycpwcrkhtvhrevki

  • Chain '6':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hgj6 (6:)
mkrtwqpnrrkrakthgfrarmrtpggrkvlkrrrqkgrwrltpavrkr

  • Chain '7':
    Sequence, based on SEQRES records: (download) 
    >2hgj7 (7:)
mpkmkthkgakkrvkitasgkvvamktgkrhlnwqksgkeirqkgrkfvlakpeaerikl
llpye

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgj7 (7:)
mpkmkthkgakkrvkitasgkvvamktgkrhlnwqksgkeirqkgrkfvlakpeaerikl
llpy

  • Chain '8':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hgj8 (8:)
mkvrasvkricdkckvirrhgrvyvicenpkhkqrqg

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2hgjC (C:)
mpkhgkryrallekvdpnkiytideaahlvkelatakfdetvevhaklgidprrsdqnvr
gtvslphglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdv
mgavgsklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkas
fppekladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjC (C:)
pkhgkryrallekvdpnkiytideaahlvkelatakfdetvevhaklgidprrsdqnvrg
tvslphglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdvm
gavgsklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkasf
ppekladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2hgjD (D:)
mavkkfkpytpsrrfmtvadfseitktepekslvkplkktggrnnqgritvrfrggghkr
lyriidfkrwdkvgipakvaaieydpnrsariallhyvdgekryiiapdglqvgqqvvag
pdapiqvgnalplrfipvgtvvhavelepkkgaklaraagtsaqiqgregdyvilrlpsg
elrkvhgecyatvgavgnadhknivlgkagrsrwlgrrphvrgaamnpvdhphgggegra
prgrppaspwgwqtkglktrkrrkpssrfiiarrkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjD (D:)
kfkpytpsrrfmtvadfseitktepekslvkplkktggrnnqgritvrfrggghkrlyri
idfkrwdkvgipakvaaieydpnrsariallhyvdgekryiiapdglqvgqqvvagpdap
iqvgnalplrfipvgtvvhavelepkkgaklaraagtsaqiqgregdyvilrlpsgelrk
vhgecyatvgavgnadhknivlgkagrsrwlgrrphvrgaamnpvdhphgggegraprgr
ppaspwgwqtkglktrkrrkpssrfiiarrkk

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hgjE (E:)
mkgilgvkvgmtrifrddravpvtvilagpcpvvqrrtpekdgytavqlgflpqnpkrvn
rplkghfakagvepvrilreirdfnpegdtvtveifkpgervdvtgtskgrgfagvmkrw
nfaggpdshgahkihrhpgsignrktpgrvykgkkmaghygaervtvmnlevvdvipeen
lllvkgavpgpngglvivretkkaak

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2hgjF (F:)
mkevavyqipvlspsgrrelaadlpaeinphllwevvrwqlakrrrgtastktrgevays
grkiwpqkhtgrarhgdigapifvgggvvfgpkprdysytlpkkvrkkglamavadrare
gklllveafagvngktkeflawakeagldgsesvllvtgnelvrraarnlpwvvtlapeg
lnvydivrterlvmdldawevfqnriggea

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjF (F:)
evavyqipvlspsgrrelaadlpaeinphllwevvrwqlakrrrgtastktrgevaysgr
kiwpqkhtgrarhgdigapifvgggvvfgpkprdysytlpkkvrkkglamavadraregk
lllveafagvngktkeflawakeagldgsesvllvtgnelvrraarnlpwvvtlapegln
vydivrterlvmdldawevfqnriggea

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hgjG (G:)
mpldvalkrkyyeevrpelirrfgyqnvwevprlekvvinqglgeakedarilekaaqel
alitgqkpavtrakksisnfklrkgmpiglrvtlrrdrmwiflekllnvalprirdfrgl
npnsfdgrgnynlglreqlifpeitydmvdalrgmdiavvttaetdeearallellgfpf
rk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2hgjH (H:)
msrigrlpipvpkgvsvevapgrvkvkgpkgelevpvspemrvvveegvvrverpsderr
hkslhgltrtlianavkgvsegyskellikgigyrarlvgraleltvgfshpvvveppeg
itfevpeptrvrvsgidkqkvgqvaanirairkpsayhekgiyyagepvrlkpgkagakk

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjH (H:)
igrlpipvpkgvsvevapgrvkvkgpkgelevpvspemrvvveegvvrverpsderrhks
lhgltrtlianavkgvsegyskellikgigyrarlvgraleltvgfshpvvveppegitf
evpeptrvrvsgidkqkvgqvaanirairkpsayhekgiyyagepvrlkpgkag

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hgjK (K:)
mkvilleplenlgdvgqvvdvkpgyarnyllprglavlatesnlkaleariraqakrlae
rkaeaerlkkilenltltipvragetkiygsvtakdiaealsrqhgvtidpkrlalekpi
kelgeyvltykphpevpiqlkvsvvaqe

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >2hgjL (L:)
mkkvvavvklqlpagkatpappvgpalgqhganimefvkafnaatanmgdaivpveitiy
adrsftfvtktppasylirkaaglekgahkpgrekvgritweqvleiakqkmpdlnttdl
eaaarmiagsarsmgvevvgapevkda

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjL (L:)
kkvvavvklqlpagkatpappvgpalgqhganimefvkafnaatanmgdaivpveitiya
drsftfvtktppasylirkaaglekgahkpgrekvgritweqvleiakqkmpdlnttdle
aaarmiagsarsmgvevv

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >2hgjM (M:)
mktyvpkqveprwvlidaegktlgrlatkiatllrgkhrpdwtpnvamgdfvvvvnadki
rvtgkkleqkiytrysgypgglkkiplekmlathpervlehavkgmlpkgplgrrlfkrl
kvyagpdhphqaqrpeklev

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjM (M:)
ktyvpkqveprwvlidaegktlgrlatkiatllrgkhrpdwtpnvamgdfvvvvnadkir
vtgkkleqkiytrysgypgglkkiplekmlathpervlehavkgmlpkgplgrrlfkrlk
vyagpdhphqaqrpeklev

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hgjN (N:)
miqpqtylevadntgarkimcirvlkgsnakyatvgdvivasvkeaiprgavkegdvvka
vvvrtkkevkrpdgsairfddnaaviinnqleprgtrvfgpvarelrekgfmkivslape
vl

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >2hgjO (O:)
mklsdlrpnpgankrrkrvgrgpgsghgktatrghkgqksrsgglkdprrfeggrsttlm
rlpkrgmqgqvpgeikrpryqgvnlkdlarfegevtpellvragllkkgyrlkilgegea
kplkvvahafsksaleklkaaggepvllea

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjO (O:)
lrpnpgankrrkrvgrgpgsghgktatrghkgqksrsgglkdprrfeggrsttlmrlpkr
gmqgqvpgeikrpryqgvnlkdlarfegevtpellvragllkkgyrlkilgegeakplkv
vahafsksaleklkaaggepvllea

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >2hgjP (P:)
mlmprrmkyrkqqrgrlkgatkggdyvafgdyglvalepawitaqqieaarvamvrhfrr
ggkifirifpdkpytkkplevrmgkgkgnvegyvavvkpgrvmfevagvteeqamealri
aghklpiktkivrrdaydeaq

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjP (P:)
rmkyrkqqrgrlkgatkggdyvafgdyglvalepawitaqqieaarvamvrhfrrggkif
irifpdkpytkkplevrmgkgkgnvegyvavvkpgrvmfevagvteeqamealriaghkl
piktkivrrdaydeaq

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >2hgjQ (Q:)
mrhlksgrklnrhsshrlalyrnqaksllthgritttvpkakelrgfvdhlihlakrgdl
harrlvlrdlqdvklvrklfdeiapryrdrqggytrvlklaerrrgdgaplalvelve

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjQ (Q:)
rhlksgrklnrhsshrlalyrnqaksllthgritttvpkakelrgfvdhlihlakrgdlh
arrlvlrdlqdvklvrklfdeiapryrdrqggytrvlklaerrrgdgaplalvelve

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >2hgjR (R:)
marltayerrkfrvrnrikrtgrlrlsvfrslkhiyaqiiddekgvtlvsasslalklkg
nktevarqvgralaekalalgikqvafdrgpykyhgrvkalaegaregglef

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjR (R:)
rltayerrkfrvrnrikrtgrlrlsvfrslkhiyaqiiddekgvtlvsasslalklkgnk
tevarqvgralaekalalgikqvafdrgpykyhgrvkalaegaregglef

  • Chain 'S':
    No sequence available.

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >2hgjT (T:)
mpraktgvvrrrkhkkilklakgywglrsksfrkaretlfaagnyayahrkrrkrdfrrl
wivrinaacrqhglnystfihglkkagievdrknladlavrepqvfaelverakaaqg

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjT (T:)
praktgvvrrrkhkkilklakgywglrsksfrkaretlfaagnyayahrkrrkrdfrrlw
ivrinaacrqhglnystfihglkkagievdrknladlavrepqvfaelverakaaqg

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hgjU (U:)
mfaivktggkqyrvepglklrvekldaepgatvelpvlllggektvvgtpvvegasvvae
vlghgrgkkilvskfkakvqyrrkkghrqpytellikeirg

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >2hgjV (V:)
meakaiaryvrisprkvrlvvdlirgksleearnilrytnkrgayfvakvlesaaanavn
nhdmledrlyvkaayvdegpalkrvlprargradiikkrtshitvilgekhgk

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjV (V:)
meakaiaryvrisprkvrlvvdlirgksleearnilrytnkrgayfvakvlesaaanavn
nhdmledrlyvkaayvdegpalkrvlprargradiikkrtshitvilgek

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >2hgjW (W:)
mktaydvilapvlsekayagfaegkytfwvhpkatkteiknavetafkvkvvkvntlhvr
gkkkrlgrylgkrpdrkkaivqvapgqkiealegli

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjW (W:)
taydvilapvlsekayagfaegkytfwvhpkatkteiknavetafkvkvvkvntlhvrgk
kkrlgrylgkrpdrkkaivqvapgqkiealegli

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2hgjX (X:)
mrvkmhvkkgdtvlvasgkykgrvgkvkevlpkkyavivegvnivkkavrvspkypqggf
iekeaplhaskvrpicpacgkptrvrkkflengkkirvcakcggaldtee

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >2hgjY (Y:)
meyrlkayyregekpsalrragklpgvmynrhlnrkvyvdlvefdkvfrqasihhvivle
lpdgqslptlvrqvnldkrrrrpehvdffvlsdepvemyvplrfvgtpagvraggvlqei
hrdilvkvsprnipefievdvsgleigdslhasdlklppgvelavspeetiaavvppedv
eklaeeaaaevaepevikkgkeeeee

    Sequence, based on observed residues (ATOM records): (download) 
    >2hgjY (Y:)
meyrlkayyregekpsalrragklpgvmynrhlnrkvyvdlvefdkvfrqasihhvivle
lpdgqslptlvrqvnldkrrrrpehvdffvlsdepvemyvplrfvgtpagvraggvlqei
hrdilvkvsprnipefievdvsgleigdslhasdlklppgvelavspeetiaavvppedv

  • Chain 'Z':
    No sequence available.